View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19625_low_3 (Length: 331)

Name: NF19625_low_3
Description: NF19625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19625_low_3
NF19625_low_3
[»] chr2 (1 HSPs)
chr2 (19-315)||(13137531-13137827)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 13137827 - 13137531
Alignment:
Q  19 agagggtattgcaaattcgggggtatacaaatcttgtataagtgttaaacaagattacattatagagaccactattgtttcatatgataattcatacact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137827 agagggtattgcaaattcgggggtatacaaatcttgtataagtgttaaacaagattacattatagagaccactattgtttcatatgataattcatacact 13137728  T
Q  119 gacaannnnnnngttctacaaatgaagaaaaagaaaaaccatgccaatgcttacatggtgactatggcacactattatgttaccaactttgctggtcttt 218  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137727 gacaatttttttgttctacaaatgaagaaaaagaaaaaccatgccaatgcttacatggtgactatggcacactattatgttaccaactttgctggtcttt 13137628  T
Q  219 cttctgcagcaaaaatataccgtagtagaggaaaaggttttattgttgaagtgaagggtccttacaaacatccaagtgatgatatacgtgcagttat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137627 cttctgcagcaaaaatataccgtagtagaggaaaaggttttattgttgaagtgaagggtccttacaaacatccaagtgatgatatacgtgcagttat 13137531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University