View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19625_low_5 (Length: 302)
Name: NF19625_low_5
Description: NF19625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19625_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 41863455 - 41863173
Alignment:
| Q |
1 |
cacatatatatctaaattaataaaataatatttttggatttatttaccttcaatgatgattcatctttagcccagtttctttctagaaataaatattcag |
100 |
Q |
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| T |
41863455 |
cacatatatatctaaattaataaaataatattttttgatttatttaccttcaatgatgattcatctttagcccagtttctttctagaaataaatattcag |
41863356 |
T |
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| Q |
101 |
caaaccacattgaccaacctataacctgcatagatattgcaatgttgttactggaacaaatcatttaaattaattaaaagccttaatgtaattctaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41863355 |
caaaccacattgaccaacctataacctgcatagatattgcaatgttgttactggaacaaatcatttaaattaattaaaagccttaatgtaattctaaatc |
41863256 |
T |
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| Q |
201 |
tacaaagaacaaagaaagagaggtttagagaaacatacagggaggtatttaaattctttcttcataatggctatcgtgctacc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41863255 |
tacaaagaacaaagaaagagaggtttagagaaacatacagggaggtatttaaattctttcttcataatggctatcgtgctacc |
41863173 |
T |
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 42121986 - 42122079
Alignment:
| Q |
42 |
atttaccttcaatgatgattcatctttagcccagtttctttctagaaataaatattcagcaaaccacattgaccaacctataacctgcatagat |
135 |
Q |
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||||||||||| || | |||||| |||||||| |||||||| ||||||||| | ||||||||||||||||||||||||| |||||||| |||| |
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| T |
42121986 |
atttaccttcagtgttagttcatccttagcccaatttctttccagaaataaaaaatcagcaaaccacattgaccaacctagaacctgcacagat |
42122079 |
T |
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