View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19625_low_9 (Length: 208)

Name: NF19625_low_9

Description: NF19625

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19625_low_9

[»] chr2 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 148; E-Value: 3e-78

Query Start/End: Original strand, 18 - 194

Target Start/End: Original strand, 14999119 - 14999297

Alignment:

Q	18	attagcggtagttagagagaccaatccagattttgatgatagtgttgatacggtgatgcttaactttgattctcaggtttgtcatattatctaactaatg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14999119	attagcggtagttagagagaccaatccagattttgatgatagtgttgatacggtgatgcttaactttgattctcaggtttgtcatattatctaactaatg	14999218	T

Q	118	ttattttctatcatgtattttctaattttc--tgtcttattttatctataaagttttgactttgtttagcaagtattat	194	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	14999219	ttattttctttcatgcattttctaattttctttgtcttatctgatctataaagttttgactttgtttagcaagtgttat	14999297	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 26 - 107

Target Start/End: Original strand, 29467973 - 29468054

Alignment:

Q	26	tagttagagagaccaatccagattttgatgatagtgttgatacggtgatgcttaactttgattctcaggtttgtcatattat	107	Q
		\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29467973	tagttaaagagagcaatccaaatttcaaagatcgtattgatatggtgacccttgaccttgattctcaggtttgtcatattat	29468054	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]