View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19626_high_1 (Length: 496)
Name: NF19626_high_1
Description: NF19626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19626_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 53 - 487
Target Start/End: Original strand, 20387209 - 20387626
Alignment:
| Q |
53 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatccatgatttataatcggtg |
152 |
Q |
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|||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
20387209 |
ctttctttcgaagaagcatggttttt-gttttatacataacccagtgatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg |
20387307 |
T |
|
| Q |
153 |
acgattcaagaatggatgatccccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtacctgtgat |
252 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20387308 |
acgattcaagaatggaatatccc-aatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatatgtgat |
20387406 |
T |
|
| Q |
253 |
ttgaaacgggtctctctgagggtatttctcttttatgatgctttactgattataatttagggttatgactactattgtcacacctttgaacaaattttta |
352 |
Q |
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| T |
20387407 |
ttgaaatgggtctctctgagggtatttctcttttatgatgctttactgaatataatttagggttatgactactatagtcacacc-ttggacaaattttta |
20387505 |
T |
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| Q |
353 |
tctcatttgtgtatagacc-aaaaaattgtaatattaatatattattgcctaacagtagtagatgtcacacctttggacaaatttgtttccttgttacct |
451 |
Q |
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| T |
20387506 |
tctcatttgtgtatagaccaaaaaaattgtaatat---------------taacagtagtagatgtcacacctttggacaaatttgttaccttgttacct |
20387590 |
T |
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| Q |
452 |
tgcagtgctatatatctcgtgtttttatgttctaat |
487 |
Q |
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| T |
20387591 |
tgcagtgctatatatctcgtgtttttatgttctaat |
20387626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 20386002 - 20386344
Alignment:
| Q |
1 |
atgttcctatttttatgttctaatttgtggtgctagggtgttttcnnnnnnn---ctttctattgaagaagcatggttttttgctttatacataacccag |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20386002 |
atgttcctatttttatgttctaatttgtggtgctagggtgttatcttttttttttctttctattgaagaagcatggttttt-gctttatacataacccag |
20386100 |
T |
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| Q |
98 |
tgatgagatctcccgaaaattgatttgataccgaatccatgatttataatcggtgacgattcaagaatggatgatccccaatacacaacagattggtact |
197 |
Q |
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||||| ||||||||||||||||||||||||| | || |||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
20386101 |
tgatgtgatctcccgaaaattgatttgatacagtatgcatgatttataatctgtgatgattcaagaatggaatatccc-aatacacaacagattggtact |
20386199 |
T |
|
| Q |
198 |
agtttgttggtagatcggattgatttcttgttcggaactggattgtacctgtgatttgaaacgggtctctctgagggtatttctcttttatgatgcttta |
297 |
Q |
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| T |
20386200 |
agtttgttggttgaccggattgatttcttgttcggaactggattgtatttgtgatttgaaacgggtctctttgagggtatttctcttttatgatgcttta |
20386299 |
T |
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| Q |
298 |
ctgattataatttagggttatgactactat-tgtcacacctttga |
341 |
Q |
| |
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| || ||||||||||||||||||||||||| |||||||||||||| |
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| T |
20386300 |
cagaatataatttagggttatgactactatatgtcacacctttga |
20386344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 53 - 341
Target Start/End: Original strand, 20386825 - 20387112
Alignment:
| Q |
53 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatccatgatttataatcggtg |
152 |
Q |
| |
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|||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
20386825 |
ctttctttcgaagaagcatggttttt-gctttatacataacccagggatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg |
20386923 |
T |
|
| Q |
153 |
acgattcaagaatggatgatccccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtacctgtgat |
252 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20386924 |
acgattcaagaatggaatatccc-aatacacaacagattggtactagtttgttggttgatcggattgatttcttgttcggaactggattgtatttgtgat |
20387022 |
T |
|
| Q |
253 |
ttgaaacgggtctctctgagggtatttctcttttatgatgctttactgattataatttagggttatgactactat-tgtcacacctttga |
341 |
Q |
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| T |
20387023 |
ttgaaacgggtctctctgagggtatttctcttttatgatgctttactgaatataatttagggttatgactactatatgtcacacctttga |
20387112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 53 - 341
Target Start/End: Original strand, 20386441 - 20386728
Alignment:
| Q |
53 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatccatgatttataatcggtg |
152 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||| ||| |
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| T |
20386441 |
ctttctttcgaagaagcatggttttt-gctttatacataacccagggatgagatctcccgaaaattgatttgatacagtatgcatgatttataatctgtg |
20386539 |
T |
|
| Q |
153 |
acgattcaagaatggatgatccccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtacctgtgat |
252 |
Q |
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| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
20386540 |
atgattcaagaatggaatatccc-aatacacaacagattggtactagtttgttggttgaccggattgatttcttgttcggaactggattgtatttgtgat |
20386638 |
T |
|
| Q |
253 |
ttgaaacgggtctctctgagggtatttctcttttatgatgctttactgattataatttagggttatgactactat-tgtcacacctttga |
341 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |||||| |
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| T |
20386639 |
ttgaaatgggtctctctgagggtatttctcttttatgatgctttacagaatataatttagggttatgactactatatgtcacaactttga |
20386728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 20387671 - 20387839
Alignment:
| Q |
75 |
tttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatccatga---------tttataatcggtgacgattcaagaat |
165 |
Q |
| |
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|||||||||| ||||||||||| | ||||||| |||| |||||||||| ||| ||| || ||||| |||||||||||||||||||||||||| |
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| T |
20387671 |
tttttgctttttacataacccattaatgagatatcccaaaaattgattggatgccgtatgcatgatttatatgatttataatcggtgacgattcaagaat |
20387770 |
T |
|
| Q |
166 |
ggatgatccccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaact |
236 |
Q |
| |
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|||| || |||||||||||||| |||| |||| |||||||| | ||||||| |||||||||| |||||| |
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| T |
20387771 |
ggat-at-cccaatacacaacaaattgatactcgtttgttgttttatcggataaatttcttgtttggaact |
20387839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 20386381 - 20386420
Alignment:
| Q |
4 |
ttcctatttttatgttctaatttgtggtgctagggtgttt |
43 |
Q |
| |
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| T |
20386381 |
ttcctatttttatgttctaatttgtggtgctagggtgttt |
20386420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 20386765 - 20386804
Alignment:
| Q |
4 |
ttcctatttttatgttctaatttgtggtgctagggtgttt |
43 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20386765 |
ttcctatttttatgttctaatttgtggtgctagggtgttt |
20386804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 20387149 - 20387188
Alignment:
| Q |
4 |
ttcctatttttatgttctaatttgtggtgctagggtgttt |
43 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20387149 |
ttcctatttttatgttctaatttgtggtgctagggtgttt |
20387188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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