View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19626_high_4 (Length: 303)
Name: NF19626_high_4
Description: NF19626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19626_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 40115307 - 40115585
Alignment:
| Q |
1 |
aaggtggattagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaatccttttagaagaggctccct |
100 |
Q |
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| T |
40115307 |
aaggtggagtagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaatccttttagaagaggctccct |
40115406 |
T |
|
| Q |
101 |
tgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataaatgtgagacagacaataacttgcaagtgata |
200 |
Q |
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| T |
40115407 |
tgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataaatgtgagacagacaataacttgcaagtgata |
40115506 |
T |
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| Q |
201 |
ttcggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaatgg |
279 |
Q |
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| T |
40115507 |
tttggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaatgg |
40115585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
73 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
162 |
Q |
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| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 42360930 - 42361002
Alignment:
| Q |
59 |
gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
131 |
Q |
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| T |
42360930 |
gtagagcccatccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 3017270 - 3017100
Alignment:
| Q |
59 |
gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggtta |
158 |
Q |
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| T |
3017270 |
gtagagcccatccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatcatgaaagaattcaatagaaattgggtta |
3017171 |
T |
|
| Q |
159 |
gttttgcataaatgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtg |
229 |
Q |
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| T |
3017170 |
gtcttgcataagttggagacagataataatttgcaagaaatatgagggacatgaaggactttgggaaggtg |
3017100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
97 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
132 |
Q |
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| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 3703285 - 3703363
Alignment:
| Q |
54 |
atgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcag |
132 |
Q |
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||||||||||| |||| |||||| |||| |||||| ||| ||||||||||||||||||| | ||||||| |||||| |
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| T |
3703285 |
atgtggtagagtccattgttatgccgtcctcttagaatgggcacccttgtcttcaaatccttaatcaaaaaacaatcag |
3703363 |
T |
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