View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19626_low_10 (Length: 213)

Name: NF19626_low_10

Description: NF19626

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19626_low_10

[»] chr7 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 180; E-Value: 2e-97

Query Start/End: Original strand, 24 - 207

Target Start/End: Complemental strand, 40817785 - 40817602

Alignment:

Q	24	atggatcctgcttgggtttctcggtattacccttgtggacctgtggtcaatcaacctgcaccttttgttgagcaccagaaagctgttactattagaaatg	123	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40817785	atggatcctgcttgggtttctcggtattacccttgtggacctgtggtcaatcaacctgcaccttttgttgagcaccagaaagctgttactattagaaatg	40817686	T

Q	124	atgttaatattaagaaggagaccattgtcatttcgcctgatgaggaaaatcctggcttttttcttgtttcgtttacctttgatg	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40817685	atgttaatattaagaaggagaccattgtcatttcgcctgatgaggaaaatcctggtttttttcttgtttcgtttacctttgatg	40817602	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 93 - 207

Target Start/End: Original strand, 28464723 - 28464837

Alignment:

Q	93	gagcaccagaaagctgttactattagaaatgatgttaatattaagaaggagaccattgtcatttcgcctgatgaggaaaatcctggcttttttcttgttt	192	Q
		\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	28464723	gagcatcagaaggcggttactataaagaatgatgttaacatcaagaaggagacactgatgattgaacctgatgaggaaaatcctgggtcttttcttgtta	28464822	T

Q	193	cgtttacctttgatg	207	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28464823	cgtttacttttgatg	28464837	T

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