View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19626_low_2 (Length: 371)
Name: NF19626_low_2
Description: NF19626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19626_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 110 - 354
Target Start/End: Original strand, 18919049 - 18919293
Alignment:
| Q |
110 |
aatatcttgttgagatagattattttaactttactnnnnnnncctacatacttccctnnnnnnnnttatgcctcctaacattatcatttaatcacgttat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18919049 |
aatatcttgttgagatagattattttaactttactaaaaaaacctacatacttccctaaaaaaaattatgcctcctaacattatcatttaatcacgttat |
18919148 |
T |
|
| Q |
210 |
aaaagaggcaagcaagcttgcattcatttgaagtcatatgtgttagattaaacaattgcatc-ttcatactacccnnnnnnncaattgcatcttcaagta |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || | ||| |
|
|
| T |
18919149 |
aaaagaggcaagcaatcttgcattcatttgaagtcatatgtgttagattaaacaattgcatctttcatactacccaaaaaaa-aattgcatttttatgta |
18919247 |
T |
|
| Q |
309 |
atgaaagtttggtggttgaagaataagatagaaccattcttttttc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18919248 |
atgaaagtttggtggttgaagaataagatagaaccatttttttttc |
18919293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 18918955 - 18918990
Alignment:
| Q |
16 |
aatttccataagttggactttcccaatctgttgaaa |
51 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18918955 |
aattttcataagttggactttcccaatctgttgaaa |
18918990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University