View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19627_high_4 (Length: 239)

Name: NF19627_high_4
Description: NF19627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19627_high_4
NF19627_high_4
[»] chr1 (13 HSPs)
chr1 (1-222)||(3370220-3370441)
chr1 (1-215)||(42558992-42559211)
chr1 (18-169)||(46637502-46637652)
chr1 (154-216)||(3370109-3370171)
chr1 (20-104)||(52642867-52642951)
chr1 (18-212)||(18183341-18183537)
chr1 (18-169)||(31802903-31803053)
chr1 (18-169)||(33679859-33680010)
chr1 (18-169)||(6576425-6576576)
chr1 (19-169)||(35478705-35478855)
chr1 (20-104)||(26224784-26224868)
chr1 (20-104)||(33600383-33600467)
chr1 (20-104)||(34777368-34777452)
[»] chr2 (17 HSPs)
chr2 (1-217)||(161197-161413)
chr2 (1-219)||(26581684-26581903)
chr2 (1-218)||(4047146-4047358)
chr2 (48-219)||(20941547-20941718)
chr2 (3-207)||(40150849-40151053)
chr2 (21-202)||(40151907-40152087)
chr2 (17-145)||(363229-363356)
chr2 (18-169)||(36018-36168)
chr2 (18-169)||(91045-91195)
chr2 (20-130)||(4415467-4415578)
chr2 (75-219)||(7744501-7744646)
chr2 (49-215)||(37418008-37418177)
chr2 (71-192)||(25620433-25620553)
chr2 (114-219)||(17948208-17948315)
chr2 (20-104)||(40561053-40561137)
chr2 (71-215)||(42880076-42880223)
chr2 (20-104)||(39664012-39664096)
[»] chr4 (16 HSPs)
chr4 (4-219)||(7150205-7150420)
chr4 (1-215)||(4614300-4614512)
chr4 (77-219)||(26397181-26397321)
chr4 (31-130)||(39294440-39294539)
chr4 (17-142)||(9590582-9590709)
chr4 (49-145)||(13438273-13438369)
chr4 (34-145)||(230867-230978)
chr4 (37-214)||(10543926-10544104)
chr4 (49-145)||(13449890-13449986)
chr4 (20-104)||(48645978-48646062)
chr4 (18-169)||(44557223-44557374)
chr4 (34-130)||(44973801-44973898)
chr4 (49-169)||(2828008-2828127)
chr4 (75-130)||(27383715-27383771)
chr4 (21-101)||(43508038-43508118)
chr4 (20-104)||(49523941-49524025)
[»] chr8 (23 HSPs)
chr8 (1-219)||(24285562-24285780)
chr8 (1-219)||(17807589-17807807)
chr8 (49-215)||(10771074-10771240)
chr8 (1-218)||(11720494-11720710)
chr8 (17-145)||(11031826-11031954)
chr8 (20-215)||(25371379-25371574)
chr8 (19-129)||(9186178-9186288)
chr8 (101-219)||(11790093-11790213)
chr8 (17-145)||(10269080-10269208)
chr8 (49-145)||(12515497-12515593)
chr8 (49-219)||(12516021-12516192)
chr8 (1-83)||(11789967-11790049)
chr8 (49-169)||(31822719-31822838)
chr8 (18-130)||(33749111-33749223)
chr8 (20-104)||(26239673-26239757)
chr8 (18-169)||(38882012-38882163)
chr8 (71-169)||(461800-461897)
chr8 (42-104)||(9672406-9672468)
chr8 (49-169)||(1321665-1321784)
chr8 (20-104)||(8609038-8609122)
chr8 (20-104)||(13107604-13107688)
chr8 (20-104)||(38548036-38548120)
chr8 (85-169)||(42895488-42895572)
[»] chr3 (26 HSPs)
chr3 (19-218)||(23876360-23876559)
chr3 (1-218)||(35862577-35862794)
chr3 (2-218)||(22219103-22219320)
chr3 (20-214)||(32843581-32843774)
chr3 (20-212)||(24845692-24845884)
chr3 (17-130)||(17260498-17260610)
chr3 (111-219)||(13466078-13466186)
chr3 (18-169)||(31886135-31886286)
chr3 (20-130)||(54093849-54093960)
chr3 (75-215)||(49495204-49495345)
chr3 (20-106)||(17516139-17516225)
chr3 (68-219)||(30501630-30501781)
chr3 (20-104)||(30599438-30599522)
chr3 (16-104)||(42280313-42280401)
chr3 (20-104)||(51685420-51685504)
chr3 (49-215)||(23774894-23775063)
chr3 (71-169)||(45256109-45256206)
chr3 (71-169)||(45897776-45897873)
chr3 (71-169)||(48634636-48634734)
chr3 (133-219)||(33050748-33050836)
chr3 (20-104)||(2225403-2225487)
chr3 (20-104)||(2377825-2377909)
chr3 (20-104)||(7884124-7884208)
chr3 (20-104)||(35904956-35905040)
chr3 (20-104)||(41978557-41978641)
chr3 (20-104)||(54899262-54899346)
[»] chr7 (23 HSPs)
chr7 (1-190)||(13035602-13035791)
chr7 (1-219)||(7402679-7402897)
chr7 (1-146)||(367550-367695)
chr7 (17-215)||(11683401-11683600)
chr7 (49-219)||(34784707-34784878)
chr7 (20-169)||(12903628-12903777)
chr7 (80-219)||(48705172-48705312)
chr7 (19-130)||(23954539-23954650)
chr7 (17-213)||(36756201-36756400)
chr7 (17-213)||(36761998-36762197)
chr7 (18-163)||(46995404-46995549)
chr7 (17-169)||(46811322-46811474)
chr7 (41-104)||(69031-69094)
chr7 (20-213)||(3690723-3690918)
chr7 (42-104)||(38550501-38550563)
chr7 (20-104)||(45360146-45360230)
chr7 (39-104)||(35692581-35692646)
chr7 (154-219)||(37792151-37792216)
chr7 (17-161)||(2168019-2168163)
chr7 (20-104)||(22154709-22154793)
chr7 (20-104)||(22210624-22210708)
chr7 (20-104)||(34776192-34776276)
chr7 (20-104)||(38473355-38473439)
[»] chr5 (12 HSPs)
chr5 (1-209)||(27076714-27076922)
chr5 (17-144)||(24497618-24497745)
chr5 (1-71)||(19998073-19998143)
chr5 (36-142)||(25509794-25509900)
chr5 (71-215)||(32836556-32836703)
chr5 (68-219)||(1343880-1344032)
chr5 (71-169)||(33257028-33257125)
chr5 (143-219)||(27349828-27349906)
chr5 (18-169)||(32089131-32089281)
chr5 (20-102)||(30464870-30464952)
chr5 (71-169)||(38177349-38177447)
chr5 (71-169)||(38204573-38204671)
[»] chr6 (6 HSPs)
chr6 (16-117)||(24431574-24431675)
chr6 (1-214)||(17935260-17935471)
chr6 (17-145)||(31209995-31210123)
chr6 (20-104)||(10569211-10569293)
chr6 (20-104)||(7050568-7050652)
chr6 (20-104)||(18644082-18644166)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3370441 - 3370220
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3370441 caaattgtgtctctttacttttttactttattatgcacatatatgcaccaaggatcacattgacatctgtttaaataattcaaagacttatttgatggta 3370342  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  3370341 tttttatataatgtagggaacgatttgatacttaggcaaataatttaacgactaatttgatggaaatatatggacagaaaggttgcattcattcatcttc 3370242  T
Q  201 aacctcttttcattacaaccat 222  Q
    ||||||||||||||||||||||    
T  3370241 aacctcttttcattacaaccat 3370220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 42559211 - 42558992
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgat---- 96  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||        
T  42559211 caaattgtgtctctttacttttttacttttttatgaacatatatgcatcaaggatcacattgacatatgtttaaataattcaaggacttatttaatttaa 42559112  T
Q  97 -ggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattca 195  Q
     |||||||| |||||||||||||| ||||||||||||||  ||||||||| |  |||| ||||||||| |||||    ||| ||||||| ||||||||||    
T  42559111 tggtattttcatataatgtagggatcgatttgatacttaatcaaataattcatggacttatttgatggtaatattatgacaaaaaggttacattcattca 42559012  T
Q  196 acttcaacctcttttcatta 215  Q
     |||||||||||||||||||    
T  42559011 tcttcaacctcttttcatta 42558992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 46637652 - 46637502
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   ||| |||||  |||| || || ||||| ||||||| ||||||||||||||| ||||||||||| |||||    
T  46637652 cttttttagtttattttgtacacatatgtttcaaagatcaatttgatatctgattaaacaattcaaggacttatttgatggt-tttttatataacgtagg 46637554  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  46637553 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 46637502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 3370171 - 3370109
Alignment:
Q  154 aatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattac 216  Q
    ||||||||| |||||| || ||||| |||||||||||||||| |||||||| |||||||||||    
T  3370171 aatttgatgaaaatatttcgacagacaggttgcattcattcatcttcaaccacttttcattac 3370109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 52642951 - 52642867
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| ||||||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  52642951 tttttactttgttcagcaaatatatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 52642867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 18183537 - 18183341
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| ||||||  ||  |||||  |||| ||||| ||||| ||||||| ||||| ||||||||| |||| | |||| ||| |    
T  18183537 cttttttagtttattttgtacacatatgcttcacagatcaatttgatatttgattaaacaattcaaggacttgtttgatggt-ttttaaaataacgtatg 18183439  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttca 212  Q
    || | ||||||||  |||  |||||||| |  ||||||||||||||||||||    ||||||||||| |||   ||| ||| ||||||||||||||||    
T  18183438 gatctatttgatatatagagaaataattcagggactaatttgatggaaatattattacagaaaggttacattcctcaatcatcttcaacctcttttca 18183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 31802903 - 31803053
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   ||| |||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  31802903 cttttttagtttattttgtacacatatgtttcaatgatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttttatataacgtagg 31803001  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  31803002 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 31803053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 33680010 - 33679859
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  ||| |||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| ||| |    
T  33680010 cttttttacttcattttgtacatatatgcttcaatgatcaatttgatatctgattaaacaattcagggacttatttgatgggtttttaatataacgtatg 33679911  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  ||| ||||||||||||||||    
T  33679910 gatctatttgatagatagagaaataattcagggacaaatttgatggaaatat 33679859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 6576425 - 6576576
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  |||||||||  |||| || || | ||| ||||||  ||||||||||||||  |||| |||||| ||| |    
T  6576425 cttttttacttcattttgtacatatatgcttcaaggatcaatttgatatctgataaaacaattcagggacttatttgatgggtttttaatataacgtatg 6576524  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     | | ||||||||  |||  |||||||| |   |||||||||||||||||||    
T  6576525 aatctatttgatagatagaaaaataattcaggaactaatttgatggaaatat 6576576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 35478855 - 35478705
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    |||||||||| ||| |  ||||||||||  | |||||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| ||| |     
T  35478855 ttttttacttcattttatacatatatgcttcgaggatcaatttgatatctgattaaacaattcagggacttatttgatgggtttttaatataacgtatga 35478756  T
Q  119 aacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    | | ||||||||  |||  |||||||| |  ||||||||||||||||||||    
T  35478755 atctatttgatagatagaaaaataattcagggactaatttgatggaaatat 35478705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26224868 - 26224784
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| |||||||   | ||||||| ||| ||||||||||| ||||    
T  26224868 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatttgttgtgaaaattcaaggacctatttgatggtctttt 26224784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 33600467 - 33600383
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||||||| || ||||   | ||||||| ||| |||||||| |||||||    
T  33600467 tttttactttgttcagcaaatgtatgcaccaaggatcacattgatatctgttgtgaaaattcaaggacatatttgatagtatttt 33600383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 34777452 - 34777368
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  34777452 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttatgaaaattcaaggacctatttgatggtatttt 34777368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 161197 - 161413
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  161197 caaattgtgtctctttacttttttactttgttatgcacatatatgcaccaaggatcacgttgacatctgtttaaataattcaaggacttatttgatggta 161296  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||| |||     
T  161297 tttttatataacgtagggatcaatttgatacttaggcaaataatttaaggactaatttgatggaaatatttcgacagaaaggttgcattcgttcatcttg 161396  T
Q  201 aacctcttttcattaca 217  Q
    || | ||||||||||||    
T  161397 aatcccttttcattaca 161413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26581903 - 26581684
Alignment:
Q  1 caaattgtgtctctatactttttt-actttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggt 99  Q
    |||||||||||||| ||||||||| |||||||| |||||||||| ||| ||||| |||||||||||| | ||| |||||||||| | |||||||||||||    
T  26581903 caaattgtgtctctttactttttttactttattctgcacatatacgcatcaagggtcacattgacatctatttgaataattcaaggccttatttgatggt 26581804  T
Q  100 atttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaactt 199  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| | || ||| ||| |||||||||||||| |||    
T  26581803 atttttatataatgtagggatcgatttgatacttaggcaaataatttaaggactaatttgatggaaatttttcgacaaaaaagttgcattcattcatctt 26581704  T
Q  200 caacctcttttcattacaac 219  Q
    ||||||||||||||||||||    
T  26581703 caacctcttttcattacaac 26581684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4047146 - 4047358
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| ||||||||||||||     |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||    
T  4047146 caaattgtgtctctttacttttttacttt-----gcacatatatgcaccatggatcacatcgacatttgtttaaataattcaaggacttatttgatgata 4047240  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||||| |||||||||||| | |||||||||||||  ||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||| || ||||    
T  4047241 tttttaaataatgtagggatcaatttgatacttagaaaaataatttaaggactaatttgatggagatatttcaacaaaaaggttgcattcatccatcttc 4047340  T
Q  201 aacctcttttcattacaa 218  Q
    || |||||||| ||||||    
T  4047341 aatctcttttctttacaa 4047358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 20941547 - 20941718
Alignment:
Q  48 ccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataattta 147  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||  ||| |||||||  |||||||| | | | ||||||||  ||| ||||||||| |    
T  20941547 ccaaagatcacattgacatctgtttaaataattcaaggacttattcaatgatattttttaataatgtaagaatcaatttgatatataggcaaataattaa 20941646  T
Q  148 acgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattacaac 219  Q
    | |||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  20941647 aggactaatttgatggaaatatttcgacagaaaggttgcattcattcatcttcaacctcttttcattacaac 20941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 40151053 - 40150849
Alignment:
Q  3 aattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatt 102  Q
    |||||||||||| || ||||||||||| || || ||||||||||| ||| ||||| ||||| || || ||| |||||||||  |||||||||||||| ||    
T  40151053 aattgtgtctctttatttttttactttgttctgaacatatatgcatcaaagatcaaattgatatctgcttatataattcaagaacttatttgatggtttt 40150954  T
Q  103 tttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaa 202  Q
    |  |||||||||||||| |||||||||| |||| ||||||||| || |||||||||| ||| |||||    ||| |||| || |||||||||| ||||||    
T  40150953 tgcatataatgtagggatcgatttgatagttagtcaaataattcaaggactaatttgctggtaatattatgacaaaaagattacattcattcatcttcaa 40150854  T
Q  203 cctct 207  Q
    |||||    
T  40150853 cctct 40150849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 40151907 - 40152087
Alignment:
Q  21 ttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaa 120  Q
    ||||||||| || || ||| ||||||| ||| ||||| |||||  | |||||| |||||||||  |||||||||||||| |||  ||||||||||||||     
T  40151907 ttttactttgttctgaacacatatgcatcaatgatcaaattgatttctgtttatataattcaagaacttatttgatggtttttgcatataatgtagggat 40152006  T
Q  121 cgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaa 202  Q
    |||||| ||| |||| ||||||||| |  |||||||||| ||| ||  |||  ||||||||||| |||||||||| ||||||    
T  40152007 cgatttaatagttagtcaaataattcatggactaatttgctggtaaattat-gacagaaaggttacattcattcatcttcaa 40152087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 363229 - 363356
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||| ||| || |||||||||||||  ||||| ||| ||||| || || ||||||||||||| |||||||||||||||  ||| ||||||| |||    
T  363229 acttttttattttgttctgcacatatatgcttcaagggtcaaattgatatctgattaaataattcaaggacttatttgatggt-ctttaatataatatag 363327  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
     || | |||||||| |||| |||||||||    
T  363328 agatcaatttgatagttagtcaaataatt 363356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 36168 - 36018
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||||||||||  ||||||||||||||| ||||||||||| |||||    
T  36168 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatatgattaaataattcagggacttatttgatggt-tttttatataacgtagg 36070  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  36069 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 36018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 91195 - 91045
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| ||| |    
T  91195 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttttatataacgtatg 91097  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  91096 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 91045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 4415578 - 4415467
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattg-acatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    |||||||||| || |||| ||||||||  ||||||||| | || | || |||||| ||||||||| ||||||||||| ||| |||  ||||||| |||||    
T  4415578 tttttactttgttctgcaaatatatgcttcaaggatcaaaatggatatatgtttatataattcaatgacttatttgacggtttttgaatataatttaggg 4415479  T
Q  119 aacgatttgata 130  Q
    | ||||||||||    
T  4415478 atcgatttgata 4415467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 7744501 - 7744646
Alignment:
Q  75 ataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaa 174  Q
    ||||||||| |||| |||||||| | |||| | ||||| |||||| ||||| |||   |||||| | ||||||| ||||||| ||||| |||||| |  |    
T  7744501 ataattcaaggactgatttgatgtt-ttttaacataatctagggatcgattagatggatagccataaaatttaaggactaatctgatgtaaatattttga 7744599  T
Q  175 cagaaaggttgcattca--ttcaacttcaacctcttttcattacaac 219  Q
    |||||||||| |||  |  |||| |||||||||||||||||||||||    
T  7744600 cagaaaggttacatgaagattcatcttcaacctcttttcattacaac 7744646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 37418008 - 37418177
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||| ||||||||||||| | |||| |||||| ||||  | | ||||||||  |||  |||||||| ||    
T  37418008 caaggatcaatttgatatctgattaaacaattcaaggacttatttgatgattttttaatataacgtagaaatctatttgatagatagagaaataattcaa 37418107  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
     |||||||||||||| |||||    ||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  37418108 ggactaatttgatggtaatattattacagaaatgttacattcctcaatcatcttcaacctcttttcatta 37418177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 25620433 - 25620553
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatata 170  Q
    ||||| |||||| |||||||||||||| | |||| |||||| ||| ||| | ||||||||  |||   ||||||| || ||||||||||||||||||||     
T  25620433 ttaaacaattcagagacttatttgatgat-ttttaatataacgtatggatctatttgatagatagagcaataattcaaggactaatttgatggaaatatt 25620531  T
Q  171 tcaacagaaaggttgcattcat 192  Q
       ||||||||||| |||||||    
T  25620532 attacagaaaggttacattcat 25620553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 17948208 - 17948315
Alignment:
Q  114 tagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattca--ttcaacttcaacctcttttc 211  Q
    |||||| |||||||||   |||||| | ||||||| ||||||| ||||| |||||| |  ||||||||||| |||  |  |||| |||||||||||||||    
T  17948208 tagggatcgatttgatggatagccataaaatttaaggactaatctgatgtaaatattttgacagaaaggtttcatgaagattcatcttcaacctcttttc 17948307  T
Q  212 attacaac 219  Q
    ||||||||    
T  17948308 attacaac 17948315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 40561053 - 40561137
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||||||| || ||||   | ||||||| ||| ||||||||||||||||    
T  40561053 tttttactttgttcagcaaatgtatgcaccaaggatcacattgatatctgttgtgaaaattcaaggacctatttgatggtatttt 40561137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 42880076 - 42880223
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatata 170  Q
    ||||| ||||||  ||||||||||||| | |||| |||||  ||| ||| | ||||||||  |||  ||| |||| || |||||||||||||| |||||     
T  42880076 ttaaacaattcagggacttatttgatgattttttaatatagcgtacggatctatttgatagatagagaaacaattcaaggactaatttgatggtaatatt 42880175  T
Q  171 tcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
      |||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  42880176 ataacagaaatgttacattcctcaatcatcttcaacctcttttcatta 42880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 39664096 - 39664012
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  39664096 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacctatttgatggtatttt 39664012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 7150205 - 7150420
Alignment:
Q  4 attgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtattt 103  Q
    ||||||||||| |||||||||||||| || | ||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  7150205 attgtgtctctttacttttttactttgttctacacatatatgcgccaaggatcacattgacatctgtttaaataattaaaggacttatttgatggtattt 7150304  T
Q  104 ttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaac 203  Q
    |||||||||||||||| ||| ||||||||||  |||||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  7150305 ttatataatgtagggatcgacttgatacttaagcaaataatttaaggattaatttgatggaaatatttcgacagaaaggttgcattcattcatcttcaac 7150404  T
Q  204 ctcttttcattacaac 219  Q
    |  |||||||||||||    
T  7150405 ccattttcattacaac 7150420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4614300 - 4614512
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||| ||||||| |||||||| ||||| || |  ||||||||||| ||||||||| ||||| |||| |||| ||||||||| ||||||||  ||||||    
T  4614300 caaattatgtctctttacttttt-actttgtttttaacatatatgcatcaaggatcaaattgaaatttttttacataattcaaggacttattaaatggta 4614398  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||| |||| |||||||||  ||||||||| |||  ||||||| |    |||||||||||||| |||||     |||||| ||||||||||||||  |||    
T  4614399 ttttcatat-atgtagggattgatttgatagttactcaaataaatatgggactaatttgatggtaatattatggcagaaatgttgcattcattcattttc 4614497  T
Q  201 aacctcttttcatta 215  Q
    |||||||||||||||    
T  4614498 aacctcttttcatta 4614512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 26397181 - 26397321
Alignment:
Q  77 aattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaaca 176  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| ||| |||| |  ||| |||||||||||| ||| || |||||| |||||| |  |||    
T  26397181 aattcaaggacttatttgatgatatttttatataatgtagggatcgaattgaaa--tagacaaataatttaatgacaaacttgatgaaaatattttgaca 26397278  T
Q  177 gaaaggttgcattcattcaacttcaacctcttttcattacaac 219  Q
    |||| ||||| || ||||| ||||||||||||||||| |||||    
T  26397279 gaaatgttgctttgattcatcttcaacctcttttcataacaac 26397321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 39294440 - 39294539
Alignment:
Q  31 ttatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgata 130  Q
    ||||||||||||||||  ||||||||| ||||| ||||  ||||||||||||| ||||||||||||||  |||| |||||||||||||| | ||||||||    
T  39294440 ttatgcacatatatgcttcaaggatcaaattgatatttaattaaataattcaatgacttatttgatgggtttttaatataatgtagggatcaatttgata 39294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 9590709 - 9590582
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatgg--tatttttatataatgt 114  Q
    ||||||||||||| || ||||||||||| |   ||| |||| ||||| || |||||| ||||||||| |||||||||| |||  | |||| |||||||||    
T  9590709 acttttttactttgttctgcacatatatacttaaagaatcaaattgatatatgtttatataattcaaggacttatttggtggatttttttaatataatgt 9590610  T
Q  115 agggaacgatttgatacttagccaaata 142  Q
    ||||| || |||||||||||| ||||||    
T  9590609 agggatcgctttgatacttagtcaaata 9590582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 13438369 - 13438273
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatt 145  Q
    ||||||||| ||||| || || ||||||||||||| ||||||||| ||||  |||| |||||||||| ||| |||||||||| |||| |||||||||    
T  13438369 caaggatcaaattgatatctgattaaataattcaaggacttattttatgggtttttaatataatgtaaggatcgatttgatagttagtcaaataatt 13438273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 230978 - 230867
Alignment:
Q  34 tgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatactt 133  Q
    |||||||||||||  | ||||||| ||||| || || ||||||||||||| ||||||||||||||  |||| ||||||||||  ||  ||||||||| ||    
T  230978 tgcacatatatgcttcgaggatcaaattgatatctgattaaataattcaatgacttatttgatgggtttttaatataatgtaatgattgatttgatagtt 230879  T
Q  134 agccaaataatt 145  Q
    || |||||||||    
T  230878 agtcaaataatt 230867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 10543926 - 10544104
Alignment:
Q  37 acatatatgcaccaaggatcacattgacatttgtttaaataattcaaag-acttatttgatggtatttttatataatgtagggaacgatttgatacttag 135  Q
    ||||||||||| ||| ||||| ||||| |  |||||| |||| | |||| |||||||||||| | |||| |||||||||| ||| | |||||||| ||||    
T  10543926 acatatatgcatcaatgatcaaattgatacctgtttatataaattaaaggacttatttgatgattttttcatataatgtaaggatcaatttgatagttag 10544025  T
Q  136 ccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcatt 214  Q
     ||||||||| |   | || |||| ||| |||||    |||||||| ||  ||||||||| ||||||||||||||||||    
T  10544026 tcaaataattcatgaattagtttgctggtaatattatgacagaaagattatattcattcatcttcaacctcttttcatt 10544104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 13449890 - 13449986
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatt 145  Q
    ||||||||| ||||| || || |||||||||||||  |||||||| ||||  |||| ||||| |||| ||| |||||||||| |||| |||||||||    
T  13449890 caaggatcaaattgatatctgattaaataattcaagaacttattttatgggtttttaatatattgtaaggatcgatttgatagttagtcaaataatt 13449986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 48646062 - 48645978
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  48646062 tttttactttattcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 48645978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 44557374 - 44557223
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  ||| |||||  |||| || |  ||||| ||||||  ||||||||||||||  |||| |||||||||| |    
T  44557374 cttttttacttcattttgtacatatatgcttcaaagatcaatttgatatctaattaaacaattcagggacttatttgatgggtttttaatataatgtatg 44557275  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     | | ||||||||  |||  |||||||| |  ||||||||||||||||||||    
T  44557274 aatctatttgatagatagaaaaataattcagggactaatttgatggaaatat 44557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 44973801 - 44973898
Alignment:
Q  34 tgcacatatatgcaccaaggatcacattg-acatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgata 130  Q
    |||| ||||||||  ||||||||| |||| | || |||||| | ||||||| ||||||||||||||  |||| ||||||| || ||| ||||||||||    
T  44973801 tgcaaatatatgcttcaaggatcaaattggatatatgtttataaaattcaaggacttatttgatggatttttaatataatttaaggatcgatttgata 44973898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 2828008 - 2828127
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||| ||||||| ||||||| | ||||||||  |||  |||||||| |     
T  2828008 caaggatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttatatataacgtagggatctatttgatagatagataaataattcag 2828106  T
Q  149 cgactaatttgatggaaatat 169  Q
     || ||||||||||| |||||    
T  2828107 ggattaatttgatggcaatat 2828127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 27383715 - 27383771
Alignment:
Q  75 ataattcaaagacttatttgatggtattttt-atataatgtagggaacgatttgata 130  Q
    ||||||||| ||||||||||| ||| ||||| ||||||| |||||| ||||||||||    
T  27383715 ataattcaaggacttatttgacggtttttttaatataatttagggatcgatttgata 27383771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 43508038 - 43508118
Alignment:
Q  21 ttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtat 101  Q
    ||||||||| ||  ||| || ||||||| |||||||||||||| |||||||   ||||||||| |||  ||||||||||||    
T  43508038 ttttactttgttcagcaaatgtatgcacaaaggatcacattgatatttgttatgataattcaaggaccaatttgatggtat 43508118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 49523941 - 49524025
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| | | |||||||   | ||||||| ||| ||||||||||||||||    
T  49523941 tttttactttgttcagcaaatgtatgcaccaaggatcacagttatatttgttgtgaaaattcaaggacctatttgatggtatttt 49524025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 24285562 - 24285780
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    ||||||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |  |||||||||||||    
T  24285562 caaattgtgtctcttaacctttttactttattttgcacatatatgcaccaaggatcacattgacatgtgtttaaataagtcaagggtttatttgatggta 24285661  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||  |||| |||||||||||||| |  ||| |||||||||||||||||| ||||    
T  24285662 tttttatataatgtagggatcgatttgatacttaggcaaataatttaaatactagtttgatggaaatattttgacataaaggttgcattcattcatcttc 24285761  T
Q  201 aacctcttttcattacaac 219  Q
    ||| |||||||||||||||    
T  24285762 aacatcttttcattacaac 24285780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17807807 - 17807589
Alignment:
Q  1 caaattgtgtctctatactttttt-actttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggt 99  Q
    |||||||||||||| || |||||| ||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||      
T  17807807 caaattgtgtctctttaatttttttactttattatgcatatatatgaaccaaggatcacattgacgtctgtttaaataattcaaagacttatt-gatgac 17807709  T
Q  100 atttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaactt 199  Q
    ||||||||||||||| |||| | ||||||||||| | |||||||||||  |||||||||||||||||||| || ||| |||||||||||||||||| |||    
T  17807708 atttttatataatgttgggatcaatttgatacttcggcaaataatttagggactaatttgatggaaatatttcgacaaaaaggttgcattcattcatctt 17807609  T
Q  200 caacctcttttcattacaac 219  Q
    ||||||||||||||||||||    
T  17807608 caacctcttttcattacaac 17807589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 10771240 - 10771074
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||  ||||| ||| |||| ||||||||| ||    
T  10771240 caaggatcaaattgacatttgtttatataattcaaggacttatttgatgatattttcatataatgtagggattgatttaataattagtcaaataattcaa 10771141  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcatta 215  Q
    ||||||||||||||| |||||  | ||||||| ||| |||||||||| |||||||||||||||||||    
T  10771140 cgactaatttgatggtaatattacgacagaaatgttacattcattcatcttcaacctcttttcatta 10771074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11720710 - 11720494
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||| ||||| ||   ||||||||||||||||||||||||||| ||| | |||||| | ||||| ||||||||||||| ||    
T  11720710 caaattgtgtctctttacttttt-actttgttcaacacatatatgcaccaaggatcacattgtcatatttttaaaaacttcaaggacttatttgatgata 11720612  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||||   ||||||||| | ||||||||||  ||| |||| ||||||| ||| ||||||||||||| || |  ||| || |||||||||||||||  |||    
T  11720611 tttttcactaatgtaggaatcgatttgatatatagacaaacaatttaaggaccaatttgatggaaagattttgacaaaatggttgcattcattcattttc 11720512  T
Q  201 aacctcttttcattacaa 218  Q
    ||||||||||||||||||    
T  11720511 aacctcttttcattacaa 11720494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 11031954 - 11031826
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| ||||||||||| ||||  |||| |||| ||||| || || ||||||||||||| ||||||||||| ||  |||| |||| ||||||    
T  11031954 acttttttactttgttatgcacatacatgcttcaagaatcaaattgatatctgattaaataattcaaggacttatttgacgggtttttaatattatgtag 11031855  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
    ||| |||||||||| |||| |||||||||    
T  11031854 ggatcgatttgatagttagtcaaataatt 11031826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 25371574 - 25371379
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    ||||||||||||| |  ||| | ||||  ||||||||| ||||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||| ||    
T  25371574 tttttactttattttatacacacatgcttcaaggatca-attgatatatgattaaacaattcagtgacttatttgatgggtttttaatataaggtagtga 25371476  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcatta 215  Q
     |||||||||| |||| ||||||||| || |||||||||||||| |||||    ||||||| ||| || |||||||| |||||||||||||||||||    
T  25371475 tcgatttgatagttagacaaataattcaaggactaatttgatggtaatattattacagaaatgttacatttcattcatcttcaacctcttttcatta 25371379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 9186178 - 9186288
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    ||||||||||| || |||||||||||||  ||||||||| ||||| || || ||||||||||||| ||||||||||||||  |||| |||||||| | ||    
T  9186178 ttttttactttgttctgcacatatatgcttcaaggatcaaattgatatatgattaaataattcaaggacttatttgatgggtttttaatataatgcatgg 9186277  T
Q  119 aacgatttgat 129  Q
    | |||||||||    
T  9186278 atcgatttgat 9186288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 11790093 - 11790213
Alignment:
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattc--attcaact 198  Q
    |||||||||||||||| || ||||||||||  ||| |||||||||||| ||| ||||||||| |||||| |   |||||| |||||||||  ||||| ||    
T  11790093 tttttatataatgtagagatcgatttgataaatagacaaataatttaaggaccaatttgatgaaaatattttgccagaaatgttgcattcatattcatct 11790192  T
Q  199 tcaacctcttttcattacaac 219  Q
    |||||||||||| ||||||||    
T  11790193 tcaacctcttttgattacaac 11790213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 10269080 - 10269208
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| ||||||||||| ||||  ||||||| | ||||| || || ||||||||| ||| ||||||||||| ||  |||| ||||||||||     
T  10269080 acttttttactttgttatgcacatacatgcttcaaggattaaattgatatctgattaaataatgcaaggacttatttgacgggtttttaatataatgtaa 10269179  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
    ||| |||||||||| || | |||||||||    
T  10269180 ggaccgatttgatagtttgtcaaataatt 10269208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 12515593 - 12515497
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatt 145  Q
    ||||||||| ||||| || || ||||||||||||| ||||||||||||||  |||| ||||||||||||||  ||||||||| |||| |||||||||    
T  12515593 caaggatcaaattgatatctgattaaataattcaaggacttatttgatgggtttttaatataatgtagggattgatttgatagttagtcaaataatt 12515497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 12516192 - 12516021
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    ||||||||| |||||  | |||||| |||||||||  |||||||||||||  |||| |||||||||||||| |||||||||| |||| ||| |||||||     
T  12516192 caaggatcaaattgatttatgtttatataattcaagtacttatttgatggctttttaatataatgtagggatcgatttgatagttagacaattaatttag 12516093  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
     ||||||| |||||| || ||    || |||||  | || |||||||| ||||| |||||||||||||||||    
T  12516092 ggactaatatgatggtaaaattattactgaaagactacatttcattcatcttcatcctcttttcattacaac 12516021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11789967 - 11790049
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaa 83  Q
    |||| ||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||| | |||||  |||||||    
T  11789967 caaactgtgtctctttacttttttactttgttatgcaaatatatgcatcaaggatcacattgacatatatttaacaaattcaa 11790049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 31822719 - 31822838
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| ||||||| | ||||||||  |||  |||||||| |     
T  31822719 caaggatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttttatataacgtagggatctatttgatagatagataaataattcag 31822817  T
Q  149 cgactaatttgatggaaatat 169  Q
     |||||||||||||| |||||    
T  31822818 ggactaatttgatggcaatat 31822838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 33749223 - 33749111
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  33749223 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggtttttttatataacgtagg 33749124  T
Q  118 gaacgatttgata 130  Q
    || | ||||||||    
T  33749123 gatctatttgata 33749111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26239757 - 26239673
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  26239757 tttttactttgttgagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaatgacttatttgatggtatttt 26239673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 38882163 - 38882012
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||| ||||| ||| || ||| ||||||  |||||||||  |||| || || ||||| ||||||  |||| |||||||||  |||| ||||||||||||    
T  38882163 cttttgtacttaattttgtacacatatgcttcaaggatcaatttgatatctgattaaacaattcagggactaatttgatggatttttaatataatgtagg 38882064  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  || ||||| |  |||||||||||||| |||||    
T  38882063 gatctatttgatagatagagaagtaattcagggactaatttgatggtaatat 38882012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 461897 - 461800
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  ||||||||||||||| |||| |||||| ||| ||| | ||||||||  |||   ||||||| || ||||||||||||||||||||    
T  461897 ttaaacaattcagggacttatttgatggt-ttttaatataacgtatggatctatttgatagatagaacaataattcaaggactaatttgatggaaatat 461800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 9672468 - 9672406
Alignment:
Q  42 tatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  9672468 tatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 9672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 1321665 - 1321784
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||   |||||||||||||| |||| |||||| ||||||| | ||||||||  |||  |||||||| |     
T  1321665 caaggatcaatttgatatctgattaaacaattcaggaacttatttgatggt-ttttaatataacgtagggatctatttgatagatagtgaaataattcag 1321763  T
Q  149 cgactaatttgatggaaatat 169  Q
     ||||||| ||||||||||||    
T  1321764 ggactaatatgatggaaatat 1321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 8609122 - 8609038
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  8609122 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 8609038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 13107688 - 13107604
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  13107688 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 13107604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 38548036 - 38548120
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  38548036 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 38548120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 42895572 - 42895488
Alignment:
Q  85 gacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||||||||||| | |||| |||||| ||||| | | ||||||||  |||  |||||||| || |||||||||||||| |||||    
T  42895572 gacttatttgatgattttttaatataacgtaggaatctatttgatagatagagaaataattcaaggactaatttgatggtaatat 42895488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 23876559 - 23876360
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||  ||| |||||||||||||||||||||||||||||    
T  23876559 ttttttactttattatgcacatatatgcaccaaggatcacattgacatcagtttaaaaaatttaagtactaatttgatggtatttttatataatgtaggg 23876460  T
Q  119 aacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattacaa 218  Q
    | || |||||||||||| |||||||||||| |||||||||||||||||||| |  |||||||||||||||| ||||| ||||||||||||||||||||||    
T  23876459 atcggtttgatacttaggcaaataatttaaggactaatttgatggaaatattttgacagaaaggttgcattaattcatcttcaacctcttttcattacaa 23876360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 35862794 - 35862577
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||| |||    
T  35862794 caaattgtgtctctttacttttttactttgttctgcacatatatgcaacaaggatcacattgacatctgtttaaataattcaaggacttatctgattgta 35862695  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||  | | |||||||| |||| |||| ||||||| |||||||||||||||||||| || ||| ||||||| |||||||||| ||||    
T  35862694 tttttatataatgtagaaatcaatttgatatttaggcaaacaatttaaggactaatttgatggaaatatttcgacaaaaaggtttcattcattcatcttc 35862595  T
Q  201 aacctcttttcattacaa 218  Q
    ||||| ||||||||||||    
T  35862594 aaccttttttcattacaa 35862577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 22219320 - 22219103
Alignment:
Q  2 aaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta- 100  Q
    ||||||||| ||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||| ||     
T  22219320 aaattgtgtatctttacttttgtactttgttctgcacatatatgcaccaaggatcgcattgacatctgtttaaataattcaaggatttatttgatgatat 22219221  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||| ||||| | |||| |||||||| |||||||||||| ||||||||||||| |||||| || ||| |||||||| ||||||||| ||||    
T  22219220 tttttatataatgcagggatcaatttaatacttaggcaaataatttaaggactaatttgatgaaaatatttcgacataaaggttggattcattcatcttc 22219121  T
Q  201 aacctcttttcattacaa 218  Q
    ||||| ||| ||||||||    
T  22219120 aacctatttccattacaa 22219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 32843774 - 32843581
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    |||||||||| || |  ||||||||||| ||| ||||| ||||| || |||||| ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  32843774 tttttactttgttctaaacatatatgcatcaatgatcaaattgatatctgtttatataattcaaggacttattttatggttttttcatataatgtaggga 32843675  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcatt 214  Q
     |||||||||| |||  ||||||||| |  |||||||||||||| |||||    || |||||||| |||||||||| ||||||||||||||||||    
T  32843674 tcgatttgataattacgcaaataattcatggactaatttgatggtaatattatgac-gaaaggttacattcattcatcttcaacctcttttcatt 32843581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 24845692 - 24845884
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    |||||||||| ||  ||| || |||||||||| ||||||||||| || ||||   ||||||||||||||||||||||||||||||||  |||| ||||||    
T  24845692 tttttactttgttcagcaaatgtatgcaccaaagatcacattgatatatgttgtgataattcaaagacttatttgatggtatttttaactaatttaggga 24845791  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttca 212  Q
    |||||||||| | ||| |||| |||  || ||| ||||||||||||| || |  | |||| ||||| |||||||||  | |||||||||||||    
T  24845792 acgatttgatgcatagacaaacaatagaaggaccaatttgatggaaagattttgatagaagggttgaattcattcatttacaacctcttttca 24845884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 17260498 - 17260610
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || | |||||||||||  ||||||||| ||||| ||||||||| ||||||||| || |||||||||||| |||| ||||||| |||    
T  17260498 acttttttactttgttctacacatatatgcttcaaggatcaaattgatatttgtttatataattcaaggatttatttgatggt-ttttaatataatttag 17260596  T
Q  117 ggaacgatttgata 130  Q
    ||| ||||||||||    
T  17260597 ggatcgatttgata 17260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 13466078 - 13466186
Alignment:
Q  111 atgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctctttt 210  Q
    ||||||||| ||||||||||| ||| |||| | ||| | ||| |||||| |||||| || |  ||||||  ||||||||||||||  |||||||||||||    
T  13466078 atgtagggatcgatttgatacatagacaaacattttcaggaccaatttgttggaaagattttgacagaagagttgcattcattcattttcaacctctttt 13466177  T
Q  211 cattacaac 219  Q
    |||||||||    
T  13466178 cattacaac 13466186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 31886286 - 31886135
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  ||| |||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| ||| |    
T  31886286 cttttttacttaattttgtacatatatgcttcaacgatcaatttgatatctgattaaacaattcagggacttatttgatggatttttaatataacgtatg 31886187  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     | | ||||||||  |||  ||||||||||  ||||||||||||||||||||    
T  31886186 aatctatttgatagatagagaaataatttagggactaatttgatggaaatat 31886135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 54093849 - 54093960
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgac-atttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    |||||||||| ||||||| ||||||||  |||| |||| |||||  || |||||| ||||||||| ||||||||||| ||| |||| ||||||| || ||    
T  54093849 tttttactttgttatgcaaatatatgcttcaagaatcaaattgaatatatgtttatataattcaatgacttatttgacggttttttaatataatttaagg 54093948  T
Q  119 aacgatttgata 130  Q
    | ||||||||||    
T  54093949 atcgatttgata 54093960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 49495345 - 49495204
Alignment:
Q  75 ataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaa 174  Q
    ||||||||| |||| |||||||| | |||  | ||||| |||||| ||||||||||  |||||| | ||||||| ||||||| ||||| |||||| |  |    
T  49495345 ataattcaaggactgatttgatgtt-tttaaacataatctagggatcgatttgatagatagccataaaatttaaggactaatctgatgtaaatattttga 49495247  T
Q  175 cagaaaggttgcat--tcattcaacttcaacctcttttcatta 215  Q
    |||||||||| |||    ||||| |||||||||||||||||||    
T  49495246 cagaaaggttacatgaagattcatcttcaacctcttttcatta 49495204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 17516139 - 17516225
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtattttta 106  Q
    |||||||||| ||| ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||||    
T  17516139 tttttactttgttaagcaaatgtatgcaccaaggatcacaatgatatctgttgtgaaaattcaaggacctatttgatggtattttta 17516225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 30501781 - 30501630
Alignment:
Q  68 tgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaat 167  Q
    |||||| |||||||||  |||||||||||||| |||| |||||||||| ||| | ||||||||  ||| |||||| || |  ||||||| |||||| ||     
T  30501781 tgtttatataattcaataacttatttgatggttttttaatataatgtaaggatcaatttgata-gtagacaaatacttcagggactaatatgatggtaaa 30501683  T
Q  168 atatcaacagaaaggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
    ||     ||||| || | || |||||||| |||||||||||||||||||||||    
T  30501682 attattgcagaatggctacatttcattcatcttcaacctcttttcattacaac 30501630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30599522 - 30599438
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| || |||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  30599522 tttttactttgttctgcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 30599438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 42280313 - 42280401
Alignment:
Q  16 tacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||| ||||||    
T  42280313 tacttttttactttgttcagcaaatgtatgcaccaaggatcacaatgatatatgttgtgaaaattcaaggacttatttgatgatatttt 42280401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 51685420 - 51685504
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| ||||||||||||| ||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  51685420 tttttactttgttcagcaaatatatgcaccaacgatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 51685504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 23774894 - 23775063
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||   |||||||||||| | |||| |||||| ||||||| | ||||||||  |||  |||||||| ||    
T  23774894 caaggatcaatttgatatctgattaaacaattcaggtacttatttgatgattttttaatataacgtagggatctatttgatagatagagaaataattcaa 23774993  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
     |||||||||||||  |||||    ||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  23774994 agactaatttgatgataatattattacagaaatgttacattcctcaatcatcttcaacctcttttcatta 23775063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 45256206 - 45256109
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| |||||| | |||||||||||||| |||| |||||| ||||||| | ||||||||  |||  |||||||| |  ||||||| ||||||||||||    
T  45256206 ttaaacaattcagaaacttatttgatggt-ttttaatataacgtagggatctatttgatagatagtgaaataattcagggactaatatgatggaaatat 45256109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 45897873 - 45897776
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  ||||||||||||||| ||||||||||| ||||||| | ||||||||  |||  |||||||| |  || ||||||||||| |||||    
T  45897873 ttaaacaattcagggacttatttgatggt-tttttatataacgtagggatctatttgatagatagataaataattcagggattaatttgatggcaatat 45897776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 48634636 - 48634734
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  ||||||||||||| | |||| |||||| ||| ||| | ||||||||  |||  |||||||| || |||||||||||||| |||||    
T  48634636 ttaaacaattcagggacttatttgatgattttttaatataacgtatggatctatttgatagatagagaaataattcaaggactaatttgatggtaatat 48634734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 33050748 - 33050836
Alignment:
Q  133 tagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattca--ttcaacttcaacctcttttcattacaac 219  Q
    |||||| | ||||||| ||||||| ||||| |||||| |  ||||||||||| |||  |  |||| |||||||||||||||||||||||    
T  33050748 tagccataaaatttaaggactaatctgatgtaaatattttgacagaaaggtttcatgaagattcatcttcaacctcttttcattacaac 33050836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 2225487 - 2225403
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  2225487 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 2225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 2377825 - 2377909
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  2377825 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 2377909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 7884208 - 7884124
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  7884208 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 7884124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 35905040 - 35904956
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  35905040 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaatgacctatttgatggtatttt 35904956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 41978557 - 41978641
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  41978557 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 41978641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 54899262 - 54899346
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  54899262 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacctatttgatggtatttt 54899346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13035602 - 13035791
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  13035602 caaattgtgtctctttacttttttactttgttttgcacatatatgcaccaaggatcacattgacatctgtttaaataattcaaggacttatttgatggta 13035701  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattc 190  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||| || ||||||||| ||||||| || | |||||||||||||||    
T  13035702 tttttatataatgtagggatcgatttgatacttaagcaaataatttaaggattaatttgattgaaatatttcgaaagaaaggttgcattc 13035791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7402679 - 7402897
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||| ||||| |||||||||||||| || ||||||||||||||  | ||||||||||||||| |||||||||||||||| |||||| ||||| |||    
T  7402679 caaattgtttctctttacttttttactttgttttgcacatatatgcaaaagggatcacattgacatatgtttaaataattcaaggacttacttgatcgta 7402778  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||| ||||| | | ||||||| ||||| |||||||||||| ||||||||||||| |||||| || | ||||| |||||||| ||||| ||||    
T  7402779 tttttatataacgtaggaatcaatttgattcttaggcaaataatttaaggactaatttgatgaaaatatttcgatagaaaagttgcattaattcatcttc 7402878  T
Q  201 aacctcttttcattacaac 219  Q
    |||||||||||||||||||    
T  7402879 aacctcttttcattacaac 7402897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 367550 - 367695
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| ||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  367550 caaattgtgtctctttacttttttactttattctgtacatatatgcgccaatgatcacattgacatttgtttaaataattcaaggacttatttgatggta 367649  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataattt 146  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||    
T  367650 tttttatataatgtagggatcgatttgatacttaggaaaataattt 367695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 11683401 - 11683600
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || |||||||||||||   ||| |||| ||||| ||||  ||||||||||||| ||||||||||||||  |||| |||||||||||    
T  11683401 acttttttactttgttctgcacatatatgctttaagaatcaaattgatatttaattaaataattcaaggacttatttgatgggtttttaatataatgtag 11683500  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcatta 215  Q
    ||| |||||||||| |||| ||||||||| |  |||||||||||||  |||||    | ||||| ||| || |||||||| |||||||||||||||||||    
T  11683501 ggatcgatttgatagttagtcaaataattcagggactaatttgatgataatattattatagaaatgttacatttcattcatcttcaacctcttttcatta 11683600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 34784878 - 34784707
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    ||||||||| |||||  | |||||| ||||||||| ||||||||||||||| |||| |||||||| ||||| |||||||||| ||||  |||||||| ||    
T  34784878 caaggatcaaattgatttctgtttatataattcaaggacttatttgatggttttttaatataatggagggatcgatttgatagttagaaaaataattcaa 34784779  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
     ||||||| |||||| || ||    ||| ||||| | || |||||||| |||||||||||||||||||||||    
T  34784778 ggactaatatgatggtaaaattattacataaaggctacatttcattcatcttcaacctcttttcattacaac 34784707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 12903628 - 12903777
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    |||| ||||| || || |||| |||||| ||||||||| | |||| | | |||| ||||||||  |||||||||||| ||||||| |||||||||| |||    
T  12903628 ttttaactttgttctgaacatgtatgcatcaaggatcaaactgacgtctatttatataattcatggacttatttgattgtattttcatataatgtaagga 12903727  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     |||||||||| |||| ||||||||| |  |||||||||||||| |||||    
T  12903728 tcgatttgatatttagtcaaataattcatggactaatttgatggtaatat 12903777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 48705172 - 48705312
Alignment:
Q  80 tcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaa 179  Q
    |||| |||||||||||||||||||| |||||||||| ||| |  ||||||| |||| ||||||||| |  ||||||| |||||| || ||    | ||||    
T  48705172 tcaaggacttatttgatggtattttaatataatgtaaggatcagtttgatagttagacaaataattcatggactaatatgatggtaaaattattatagaa 48705271  T
Q  180 aggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
    ||| | || |||||||| ||||||||| |||||||||||||    
T  48705272 aggatacatttcattcatcttcaacctgttttcattacaac 48705312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 23954539 - 23954650
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    ||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| |||||| |||||||||||||||| |||| |||||||||||||    
T  23954539 ttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcagagacttatttgatggttttttaatataatgtaggg 23954638  T
Q  119 aacgatttgata 130  Q
    | | ||||||||    
T  23954639 atctatttgata 23954650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 36756201 - 36756400
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| ||| || | ||||||||  |||||||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||     
T  36756201 acttttttacttcattttgtatatatatgcttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggatttttaatataacgtat 36756300  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca---ttcattcaacttcaacctcttttcat 213  Q
    | | | |||||||| ||||  |||||||| |  ||||||||||||| ||||||    ||||||||||| ||   || | ||| |||||||||||||||||    
T  36756301 gaatctatttgatagttagaaaaataattcagggactaatttgatgaaaatattattacagaaaggttacatttttgaatcatcttcaacctcttttcat 36756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 36761998 - 36762197
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| ||| || | ||||||||  |||||||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||     
T  36761998 acttttttacttcattttgtatatatatgcttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggatttttaatataacgtat 36762097  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca---ttcattcaacttcaacctcttttcat 213  Q
    | | | |||||||| ||||  |||||||| |  ||||||||||||| ||||||    ||||||||||| ||   || | ||| |||||||||||||||||    
T  36762098 gaatctatttgatagttagaaaaataattcagggactaatttgatgaaaatattattacagaaaggttacatttttgaatcatcttcaacctcttttcat 36762197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 46995549 - 46995404
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||| ||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  46995549 cttttttagtttattttgtacacatatgtttcaaggaacaatttgatatctgattaaacaattcagggacttatttgatggtttttttatataacgtagg 46995450  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatgg 163  Q
    || | ||||||||  |||  |||||||| |  ||||||||||||||    
T  46995449 gatctatttgatagatagaaaaataattcagggactaatttgatgg 46995404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 46811474 - 46811322
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| | | || ||||||||||  |||| ||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||     
T  46811474 acttttttacttcactttgtacatatatgcttcaagtatcaatttgatatatgattaaacaattcagggacttatttgatggatttttaatataacgtat 46811375  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    | | | ||||||||  |||  ||||||||||  ||||||||||||||||||||    
T  46811374 gaatctatttgatatatagaaaaataatttatggactaatttgatggaaatat 46811322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 69031 - 69094
Alignment:
Q  41 atatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    ||||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||||||||||    
T  69031 atatgcaccaaggatcacattgatatctgttatgataattcaaggacctatttgatggtatttt 69094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 3690918 - 3690723
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    ||||||||| ||| || ||  ||||||  |||||||||  |||| || || ||||| |||||| | |||||||||||||| |||| |||||| |||||||    
T  3690918 tttttacttaattttgtacccatatgcttcaaggatcaatttgatatctgattaaacaattcagaaacttatttgatggt-ttttaatataacgtaggga 3690820  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttcat 213  Q
     | ||||||||  |||  |||||||| |  ||||||| ||||||||||||    ||||||||||| |||   | | ||| |||||||||||||||||    
T  3690819 tctatttgatagatagtgaaataattcagagactaatatgatggaaatattattacagaaaggttacatttctgaatcatcttcaacctcttttcat 3690723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 38550563 - 38550501
Alignment:
Q  42 tatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||||||| ||| || ||||  || ||||||| ||||||||||||||||||||    
T  38550563 tatgcaccaaggatcacagtgatatatgttgtaaaaattcaaggacttatttgatggtatttt 38550501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 45360146 - 45360230
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||||||| ||||||||||||||||    
T  45360146 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaagacctatttgatggtatttt 45360230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 35692646 - 35692581
Alignment:
Q  39 atatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    ||||||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  35692646 atatatgcaccaaggatcacagtgatatctgttgtgaaaattcaatgacctatttgatggtatttt 35692581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 37792216 - 37792151
Alignment:
Q  154 aatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattacaac 219  Q
    |||||||||||||||| |  |||||| ||||| |||||||||    ||||||||||||||||||||    
T  37792216 aatttgatggaaatattttgacagaagggttgaattcattcattgacaacctcttttcattacaac 37792151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 2168019 - 2168163
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| ||| || ||||||||||  |||||||||  |||| || || ||||| ||||||  |||||||||||| |  |||| |||||| |||     
T  2168019 acttttttacttaattttgtacatatatgcttcaaggatcaatttgatatctgattaaacaattcagggacttatttgataggtttttaatataacgtat 2168118  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgat 161  Q
    ||| | ||||| ||  |||  |||||||| |  ||||||||||||    
T  2168119 ggatctatttggtagatagagaaataattcagggactaatttgat 2168163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 22154709 - 22154793
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| |||||||||||| |||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  22154709 tttttactttgtttagcaaatatatgcaccatggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 22154793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 22210624 - 22210708
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| |||||||||||| |||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  22210624 tttttactttgtttagcaaatatatgcaccatggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 22210708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 34776276 - 34776192
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||||||  ||||||||||||||||    
T  34776276 tttttactttgtttagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaagatctatttgatggtatttt 34776192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 38473439 - 38473355
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  38473439 tttttactttgtttagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 38473355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27076714 - 27076922
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||| ||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  27076714 caaattatgtctttttacttttttactttattctgcacatatttgcaccaaggatcacattgacatctgtttaaataattcaatgatttatttgatggta 27076813  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||||  |||||||||||| ||||||| |  |||||||||||||||||||||| ||||    
T  27076814 tttttatataatgtagggatcaatttgatacttgggcaaataatttagggactaatttgatagaaatattttgacagaaaggttgcattcattcatcttc 27076913  T
Q  201 aacctcttt 209  Q
    |||||||||    
T  27076914 aacctcttt 27076922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 24497618 - 24497745
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || |||||||||||||  ||||||||| ||||| || || ||||||||||||| || |||||||||||  |||| |||||||||||    
T  24497618 acttttttactttcttctgcacatatatgcttcaaggatcaaattgatatatgattaaataattcaatgatttatttgatgggtttttaatataatgtag 24497717  T
Q  117 ggaacgatttgatacttagccaaataat 144  Q
     || | |||||||| |||  ||||||||    
T  24497718 tgatcaatttgataattattcaaataat 24497745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19998073 - 19998143
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtt 71  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||    
T  19998073 caaattgtgtctctttacttttttactttattctgcacatatatgcactaagaatcacattgacatctgtt 19998143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 25509900 - 25509794
Alignment:
Q  36 cacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttag 135  Q
    ||||||||||   ||||||||| ||||| || |||||| |||||||||  |||||||||||||| |||| | |||||||||||| | |||||||  ||||    
T  25509900 cacatatatgtttcaaggatcaaattgatatctgtttatataattcaagaacttatttgatggttttttaacataatgtagggatcaatttgattgttag 25509801  T
Q  136 ccaaata 142  Q
     ||||||    
T  25509800 tcaaata 25509794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 32836703 - 32836556
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatata 170  Q
    ||||| ||||||  ||||||||||||| | |||| |||||| ||||||| | ||||||||  |||  |||||||| || |||||||||||||| |||||     
T  32836703 ttaaacaattcagggacttatttgatgattttttaatataacgtagggatctatttgatagatagagaaataattcaaggactaatttgatggtaatatt 32836604  T
Q  171 tcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
       ||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  32836603 attacagaaatgttacattcctcaatcatcttcaacctcttttcatta 32836556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 1344032 - 1343880
Alignment:
Q  68 tgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaat 167  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||| | ||   ||| ||||| |||| ||||||||| |  ||||||| |||||| ||     
T  1344032 tgtttatataattcaaagacttatttgatggtcttttaatataatgcaagggtggatctgatagttagacaaataattcagagactaatatgatggtaaa 1343933  T
Q  168 atatcaacagaaagg-ttgcattcattcaacttcaacctcttttcattacaac 219  Q
    ||    ||| ||||| ||   |||||||| ||||||||||||||| |||||||    
T  1343932 attattacataaaggctttatttcattcatcttcaacctcttttcgttacaac 1343880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 33257028 - 33257125
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||||||||||  |||||||||||| || ||||||||||| ||||| | | ||||||||  |||  ||||||||||  |||||||||||||| |||||    
T  33257028 ttaaataattcagggacttatttgatcgt-tttttatataacgtaggaatctatttgatagatagataaataatttagggactaatttgatggcaatat 33257125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 27349828 - 27349906
Alignment:
Q  143 atttaacgactaatttgatggaaatatatcaacagaaaggttgcattca--ttcaacttcaacctcttttcattacaac 219  Q
    |||||| ||||||||||||| |||||| |  ||||||||||| |||  |  |||| |||||||||||||||||||||||    
T  27349828 atttaaggactaatttgatgtaaatattttgacagaaaggttacatgaagattcatcttcaacctcttttcattacaac 27349906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 32089131 - 32089281
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| | |||    
T  32089131 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcatggacttatttgatggt-tttttatataacgcagg 32089229  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  ||||| || |  |||||||||||||| |||||    
T  32089230 gatctatttgatagatagagaaatagttcatggactaatttgatggcaatat 32089281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 30464952 - 30464870
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatt 102  Q
    |||||||||| ||  ||| ||||||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||    
T  30464952 tttttactttgttcagcaaatatatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatt 30464870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 38177447 - 38177349
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  || |||||| ||| | |||| |||||| ||||||| | ||||||||  |||  ||||||||||| |||||||||||||| |||||    
T  38177447 ttaaacaattcagggatttatttaatgattttttaatataacgtagggatctatttgatagatagagaaataatttaaggactaatttgatggtaatat 38177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 38204671 - 38204573
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  || |||||| ||| | |||| |||||| ||||||| | ||||||||  |||  ||||||||||| |||||||||||||| |||||    
T  38204671 ttaaacaattcagggatttatttaatgattttttaatataacgtagggatctatttgatagatagagaaataatttaaggactaatttgatggtaatat 38204573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 24431675 - 24431574
Alignment:
Q  16 tacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgta 115  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  24431675 tacttttttacttaattctgcacatatatgcaccaaggatcacgttgacatttgtttaaataattcaaggacttatttgatggtatttttatatagtgta 24431576  T
Q  116 gg 117  Q
    ||    
T  24431575 gg 24431574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17935260 - 17935471
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||| ||||| || || ||||||||||| ||| ||||| ||||| || |||||| ||||||||| | ||||||| |||||     
T  17935260 caaattgtgtctctttacttttt-actttgttctgaacatatatgcatcaatgatcaaattgatatctgtttatataattcaagggcttattttatggtt 17935358  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||| |||||||||||| | |||||||||| |||  ||||||||| |  |||||||||| ||| |||||    || |||||||| |||||||||| ||||    
T  17935359 ttttcatataatgtaggaatcgatttgatatttacgcaaataattcatggactaatttgttggtaatattatgac-gaaaggttacattcattcatcttc 17935457  T
Q  201 aacctcttttcatt 214  Q
    ||||||||||||||    
T  17935458 aacctcttttcatt 17935471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 31209995 - 31210123
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || | || ||||||||  | ||||||| ||||| || || ||||||||||||| |||||||||||||   |||| ||||||||||     
T  31209995 acttttttactttgttctacatatatatgcttcgaggatcaaattgatatctgattaaataattcaatgacttatttgatgactttttaatataatgtaa 31210094  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
    ||| |||||||||| |||| |||||||||    
T  31210095 ggatcgatttgatagttagtcaaataatt 31210123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 10569211 - 10569293
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || |||| |||  |||||| ||||||||||||||||||||    
T  10569211 tttttactttgtttagcaaatgtatgcaccaaggatcacaatgatatatgttgaaa--attcaaggacttatttgatggtatttt 10569293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 7050568 - 7050652
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  7050568 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaatgacttatttgatggtatttt 7050652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 18644082 - 18644166
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  18644082 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 18644166  T

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