View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19627_high_5 (Length: 223)
Name: NF19627_high_5
Description: NF19627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19627_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3679161 - 3679365
Alignment:
| Q |
1 |
cgagggccgaaatcaaaggataatgatatttgtacgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataaca |
100 |
Q |
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| T |
3679161 |
cgagggccgaaatcaaaggataatgatatttgtacgaagagtattcataaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataaca |
3679260 |
T |
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| Q |
101 |
catacacgctgtgatttccgctcattcctgaactatacactacttcttcttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgagg |
200 |
Q |
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| T |
3679261 |
catacacgctgtgatttccgctcattcctgaactatacactacttcttcttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgagg |
3679360 |
T |
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| Q |
201 |
catgt |
205 |
Q |
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||||| |
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| T |
3679361 |
catgt |
3679365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3693691 - 3693884
Alignment:
| Q |
1 |
cgagggccgaaatcaaaggataatgatatttgtacgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataaca |
100 |
Q |
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||||||||||||| ||||||||||||||||| |||||||| |||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
3693691 |
cgagggccgaaattaaaggataatgatatttctacgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataaca |
3693790 |
T |
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| Q |
101 |
catacacgctgtgatttccgctcattcctgaactatacactacttctt-cttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgag |
199 |
Q |
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| T |
3693791 |
catacacactgtgatttccgctcattcctgaaccatacactgcttcttcctttataattacaac----ac---gtatcgattcgggaagatcatgatgag |
3693883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 3685925 - 3686117
Alignment:
| Q |
2 |
gagggccgaaatcaaaggataatgatatttgta-cgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttcttataaca |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| | |||||| ||| |||| |||||||| |||| |||| |||||| |||||||||||| ||| ||||| |
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| T |
3685925 |
gagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttttaaca |
3686023 |
T |
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| Q |
101 |
catacacgctgtgatttccgctcattcctgaactatacactacttctt-cttaataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgag |
199 |
Q |
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| T |
3686024 |
catacacactgtgatttccgctcattcatgaactatacacaacttcttcctttataattaccac----ac---gtatcgattcgggaagatcgttatgag |
3686116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 3675579 - 3675650
Alignment:
| Q |
93 |
ttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-cttaataattacaac |
163 |
Q |
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||||||||| ||| ||||| ||||||||||||||| |||||||||||| |||||| ||| ||||||||||| |
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| T |
3675579 |
ttataacacttacgtgctgtcatttccgctcattccagaactatacactgcttcttcctttataattacaac |
3675650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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