View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19627_low_5 (Length: 259)
Name: NF19627_low_5
Description: NF19627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19627_low_5 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0285 (1 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0170 (1 HSPs) |
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| [»] scaffold1300 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 54 - 259
Target Start/End: Original strand, 10801767 - 10801972
Alignment:
| Q |
54 |
ggtggatgtaatgatagggggcttgctttggttgggagaagaatagagatcacgttctcagatgaaagagaaagggaaagaagaaatgaacctgaatagg |
153 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10801767 |
ggtggatgtaatgttaggtggcttgctttggttgggagaagaatagagatcacgttctcagatgaaagagaaagggaaagaagaaatgaacctgaatagg |
10801866 |
T |
|
| Q |
154 |
aattctgcaaactaattctggcggtggctccccttcccaaccccagttccgccactatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaat |
253 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10801867 |
aattctgcaaactaattctggcggtggctccccttcccaaccccagttccgccactatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaat |
10801966 |
T |
|
| Q |
254 |
ccttac |
259 |
Q |
| |
|
|||||| |
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|
| T |
10801967 |
ccttac |
10801972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 6165247 - 6165362
Alignment:
| Q |
54 |
ggtggatgtaatgatagggggcttgctttggttgggagaagaatagagatcacgttctcagatgaaagagaaagggaaagaagaaatgaacctgaatagg |
153 |
Q |
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|
||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| || |
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| T |
6165247 |
ggtggatgtaatgatcggtcgcttgctttggttgggagaagaatagagatcgcgttctcagatgagagagaaagggaaagaagaaatgaaactgaatggg |
6165346 |
T |
|
| Q |
154 |
aattctgcaaactaat |
169 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
6165347 |
aattctgcaaattaat |
6165362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 13569524 - 13569576
Alignment:
| Q |
207 |
actatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatccttac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
13569524 |
actatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttac |
13569576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 18542455 - 18542507
Alignment:
| Q |
207 |
actatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatccttac |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
18542455 |
actatttaccaaaatttgagccttctgaagtaataatcctaagaaatccttac |
18542507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 324523 - 324491
Alignment:
| Q |
111 |
tcagatgaaagagaaagggaaagaagaaatgaa |
143 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
324523 |
tcagatgaaagagaaaggggaagaagaaatgaa |
324491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 22014726 - 22014631
Alignment:
| Q |
74 |
gcttgctttggttgggagaagaatagagatcacgttctcagatgaaagagaaagggaaagaagaaatgaacctgaataggaattctgcaaactaat |
169 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |
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| T |
22014726 |
gcttgctttggttgggagaagaatagagaatgcgttctcagatgaaagagaaagggaaagaagaaatgaaactgaatgggaattctgcaaattaat |
22014631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 25130756 - 25130808
Alignment:
| Q |
207 |
actatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatccttac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
25130756 |
actatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttac |
25130808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 1668015 - 1667936
Alignment:
| Q |
76 |
ttgctttggttgggagaagaatagagatcacg-ttctcagatgaaagagaaagggaaagaagaaatgaacctgaataggaa |
155 |
Q |
| |
|
||||||||||||||||||||| || |||| || ||||||||||||||||||| | |||| | ||||| ||||||||||| |
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| T |
1668015 |
ttgctttggttgggagaagaaaag-gatcgcgtttctcagatgaaagagaaacaggaagagggaatgagactgaataggaa |
1667936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 38521473 - 38521521
Alignment:
| Q |
107 |
gttctcagatgaaagagaaagggaaagaagaaatgaacctgaataggaa |
155 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||| ||||||||||| |
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|
| T |
38521473 |
gttctcagatgaaagagaaacgggaagaggaaatgagactgaataggaa |
38521521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 8581 - 8656
Alignment:
| Q |
54 |
ggtggatgtaatgatagggggcttgctttggttgggagaagaatagagatcacgttctcagatgaaagagaaaggg |
129 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
8581 |
ggtggatgtaatgtttggtcgcttgctttggttgggagaagaatagagatcgcattctcagatgaaagagaaaggg |
8656 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 2774 - 2699
Alignment:
| Q |
54 |
ggtggatgtaatgatagggggcttgctttggttgggagaagaatagagatcacgttctcagatgaaagagaaaggg |
129 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
2774 |
ggtggatgtaatgttcggtcgcttgctttggttgggagaagaatagagatcgcattctcagatgaaagagaaaggg |
2699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 141924 - 141873
Alignment:
| Q |
207 |
actatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatcctta |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
141924 |
actatttaccaaaatttgagcctcttgaagtaataatcctaagaaatcctta |
141873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 43301270 - 43301318
Alignment:
| Q |
210 |
atttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatcctta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43301270 |
atttaccaaaatttgagcctcttgaagtaataatcctaagaaatcctta |
43301318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 38115304 - 38115268
Alignment:
| Q |
107 |
gttctcagatgaaagagaaagggaaagaagaaatgaa |
143 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38115304 |
gttctcagatgaaagagaaagggaaagaggaaatgaa |
38115268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 23218470 - 23218518
Alignment:
| Q |
107 |
gttctcagatgaaagagaaagggaaagaagaaatgaacctgaataggaa |
155 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||| ||||||||||| |
|
|
| T |
23218470 |
gttctcagatgaaagagaaacgggaagaggaaatgagactgaataggaa |
23218518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 8254 - 8203
Alignment:
| Q |
208 |
ctatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatccttac |
259 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8254 |
ctatttaggaaaatttgagcctcttgaagtaataatcctaagaaatccttac |
8203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 38978623 - 38978671
Alignment:
| Q |
107 |
gttctcagatgaaagagaaagggaaagaagaaatgaacctgaataggaa |
155 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||| ||||||||||| |
|
|
| T |
38978623 |
gttctcagatgaaagagaaacgggaagaggaaatgaaactgaataggaa |
38978671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 8287881 - 8287843
Alignment:
| Q |
2 |
tgtttcctaatgatgatgttggttgacgaatggaggtgg |
40 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8287881 |
tgtttcctaatgatgatggtggttgacgaatggtggtgg |
8287843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1300 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1300
Description:
Target: scaffold1300; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 1183 - 1219
Alignment:
| Q |
107 |
gttctcagatgaaagagaaagggaaagaagaaatgaa |
143 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1183 |
gttctcaaatgaaagagaaagggaaagaggaaatgaa |
1219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 2339064 - 2339112
Alignment:
| Q |
107 |
gttctcagatgaaagagaaagggaaagaagaaatgaacctgaataggaa |
155 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||| ||||||||||| |
|
|
| T |
2339064 |
gttctcagatgaaagagaaacgggaagaggaaatgagactgaataggaa |
2339112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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