View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19627_low_7 (Length: 239)

Name: NF19627_low_7
Description: NF19627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19627_low_7
NF19627_low_7
[»] chr1 (13 HSPs)
chr1 (1-222)||(3370220-3370441)
chr1 (1-215)||(42558992-42559211)
chr1 (18-169)||(46637502-46637652)
chr1 (154-216)||(3370109-3370171)
chr1 (20-104)||(52642867-52642951)
chr1 (18-212)||(18183341-18183537)
chr1 (18-169)||(31802903-31803053)
chr1 (18-169)||(33679859-33680010)
chr1 (18-169)||(6576425-6576576)
chr1 (19-169)||(35478705-35478855)
chr1 (20-104)||(26224784-26224868)
chr1 (20-104)||(33600383-33600467)
chr1 (20-104)||(34777368-34777452)
[»] chr2 (17 HSPs)
chr2 (1-217)||(161197-161413)
chr2 (1-219)||(26581684-26581903)
chr2 (1-218)||(4047146-4047358)
chr2 (48-219)||(20941547-20941718)
chr2 (3-207)||(40150849-40151053)
chr2 (21-202)||(40151907-40152087)
chr2 (17-145)||(363229-363356)
chr2 (18-169)||(36018-36168)
chr2 (18-169)||(91045-91195)
chr2 (20-130)||(4415467-4415578)
chr2 (75-219)||(7744501-7744646)
chr2 (49-215)||(37418008-37418177)
chr2 (71-192)||(25620433-25620553)
chr2 (114-219)||(17948208-17948315)
chr2 (20-104)||(40561053-40561137)
chr2 (71-215)||(42880076-42880223)
chr2 (20-104)||(39664012-39664096)
[»] chr4 (16 HSPs)
chr4 (4-219)||(7150205-7150420)
chr4 (1-215)||(4614300-4614512)
chr4 (77-219)||(26397181-26397321)
chr4 (31-130)||(39294440-39294539)
chr4 (17-142)||(9590582-9590709)
chr4 (49-145)||(13438273-13438369)
chr4 (34-145)||(230867-230978)
chr4 (37-214)||(10543926-10544104)
chr4 (49-145)||(13449890-13449986)
chr4 (20-104)||(48645978-48646062)
chr4 (18-169)||(44557223-44557374)
chr4 (34-130)||(44973801-44973898)
chr4 (49-169)||(2828008-2828127)
chr4 (75-130)||(27383715-27383771)
chr4 (21-101)||(43508038-43508118)
chr4 (20-104)||(49523941-49524025)
[»] chr8 (23 HSPs)
chr8 (1-219)||(24285562-24285780)
chr8 (1-219)||(17807589-17807807)
chr8 (49-215)||(10771074-10771240)
chr8 (1-218)||(11720494-11720710)
chr8 (17-145)||(11031826-11031954)
chr8 (20-215)||(25371379-25371574)
chr8 (19-129)||(9186178-9186288)
chr8 (101-219)||(11790093-11790213)
chr8 (17-145)||(10269080-10269208)
chr8 (49-145)||(12515497-12515593)
chr8 (49-219)||(12516021-12516192)
chr8 (1-83)||(11789967-11790049)
chr8 (49-169)||(31822719-31822838)
chr8 (18-130)||(33749111-33749223)
chr8 (20-104)||(26239673-26239757)
chr8 (18-169)||(38882012-38882163)
chr8 (71-169)||(461800-461897)
chr8 (42-104)||(9672406-9672468)
chr8 (49-169)||(1321665-1321784)
chr8 (20-104)||(8609038-8609122)
chr8 (20-104)||(13107604-13107688)
chr8 (20-104)||(38548036-38548120)
chr8 (85-169)||(42895488-42895572)
[»] chr3 (26 HSPs)
chr3 (19-218)||(23876360-23876559)
chr3 (1-218)||(35862577-35862794)
chr3 (2-218)||(22219103-22219320)
chr3 (20-214)||(32843581-32843774)
chr3 (20-212)||(24845692-24845884)
chr3 (17-130)||(17260498-17260610)
chr3 (111-219)||(13466078-13466186)
chr3 (18-169)||(31886135-31886286)
chr3 (20-130)||(54093849-54093960)
chr3 (75-215)||(49495204-49495345)
chr3 (20-106)||(17516139-17516225)
chr3 (68-219)||(30501630-30501781)
chr3 (20-104)||(30599438-30599522)
chr3 (16-104)||(42280313-42280401)
chr3 (20-104)||(51685420-51685504)
chr3 (49-215)||(23774894-23775063)
chr3 (71-169)||(45256109-45256206)
chr3 (71-169)||(45897776-45897873)
chr3 (71-169)||(48634636-48634734)
chr3 (133-219)||(33050748-33050836)
chr3 (20-104)||(2225403-2225487)
chr3 (20-104)||(2377825-2377909)
chr3 (20-104)||(7884124-7884208)
chr3 (20-104)||(35904956-35905040)
chr3 (20-104)||(41978557-41978641)
chr3 (20-104)||(54899262-54899346)
[»] chr7 (23 HSPs)
chr7 (1-190)||(13035602-13035791)
chr7 (1-219)||(7402679-7402897)
chr7 (1-146)||(367550-367695)
chr7 (17-215)||(11683401-11683600)
chr7 (49-219)||(34784707-34784878)
chr7 (20-169)||(12903628-12903777)
chr7 (80-219)||(48705172-48705312)
chr7 (19-130)||(23954539-23954650)
chr7 (17-213)||(36756201-36756400)
chr7 (17-213)||(36761998-36762197)
chr7 (18-163)||(46995404-46995549)
chr7 (17-169)||(46811322-46811474)
chr7 (41-104)||(69031-69094)
chr7 (20-213)||(3690723-3690918)
chr7 (42-104)||(38550501-38550563)
chr7 (20-104)||(45360146-45360230)
chr7 (39-104)||(35692581-35692646)
chr7 (154-219)||(37792151-37792216)
chr7 (17-161)||(2168019-2168163)
chr7 (20-104)||(22154709-22154793)
chr7 (20-104)||(22210624-22210708)
chr7 (20-104)||(34776192-34776276)
chr7 (20-104)||(38473355-38473439)
[»] chr5 (12 HSPs)
chr5 (1-209)||(27076714-27076922)
chr5 (17-144)||(24497618-24497745)
chr5 (1-71)||(19998073-19998143)
chr5 (36-142)||(25509794-25509900)
chr5 (71-215)||(32836556-32836703)
chr5 (68-219)||(1343880-1344032)
chr5 (71-169)||(33257028-33257125)
chr5 (143-219)||(27349828-27349906)
chr5 (18-169)||(32089131-32089281)
chr5 (20-102)||(30464870-30464952)
chr5 (71-169)||(38177349-38177447)
chr5 (71-169)||(38204573-38204671)
[»] chr6 (6 HSPs)
chr6 (16-117)||(24431574-24431675)
chr6 (1-214)||(17935260-17935471)
chr6 (17-145)||(31209995-31210123)
chr6 (20-104)||(10569211-10569293)
chr6 (20-104)||(7050568-7050652)
chr6 (20-104)||(18644082-18644166)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3370441 - 3370220
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3370441 caaattgtgtctctttacttttttactttattatgcacatatatgcaccaaggatcacattgacatctgtttaaataattcaaagacttatttgatggta 3370342  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  3370341 tttttatataatgtagggaacgatttgatacttaggcaaataatttaacgactaatttgatggaaatatatggacagaaaggttgcattcattcatcttc 3370242  T
Q  201 aacctcttttcattacaaccat 222  Q
    ||||||||||||||||||||||    
T  3370241 aacctcttttcattacaaccat 3370220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 42559211 - 42558992
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgat---- 96  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||        
T  42559211 caaattgtgtctctttacttttttacttttttatgaacatatatgcatcaaggatcacattgacatatgtttaaataattcaaggacttatttaatttaa 42559112  T
Q  97 -ggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattca 195  Q
     |||||||| |||||||||||||| ||||||||||||||  ||||||||| |  |||| ||||||||| |||||    ||| ||||||| ||||||||||    
T  42559111 tggtattttcatataatgtagggatcgatttgatacttaatcaaataattcatggacttatttgatggtaatattatgacaaaaaggttacattcattca 42559012  T
Q  196 acttcaacctcttttcatta 215  Q
     |||||||||||||||||||    
T  42559011 tcttcaacctcttttcatta 42558992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 46637652 - 46637502
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   ||| |||||  |||| || || ||||| ||||||| ||||||||||||||| ||||||||||| |||||    
T  46637652 cttttttagtttattttgtacacatatgtttcaaagatcaatttgatatctgattaaacaattcaaggacttatttgatggt-tttttatataacgtagg 46637554  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  46637553 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 46637502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 3370171 - 3370109
Alignment:
Q  154 aatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattac 216  Q
    ||||||||| |||||| || ||||| |||||||||||||||| |||||||| |||||||||||    
T  3370171 aatttgatgaaaatatttcgacagacaggttgcattcattcatcttcaaccacttttcattac 3370109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 52642951 - 52642867
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| ||||||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  52642951 tttttactttgttcagcaaatatatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 52642867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 18183537 - 18183341
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| ||||||  ||  |||||  |||| ||||| ||||| ||||||| ||||| ||||||||| |||| | |||| ||| |    
T  18183537 cttttttagtttattttgtacacatatgcttcacagatcaatttgatatttgattaaacaattcaaggacttgtttgatggt-ttttaaaataacgtatg 18183439  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttca 212  Q
    || | ||||||||  |||  |||||||| |  ||||||||||||||||||||    ||||||||||| |||   ||| ||| ||||||||||||||||    
T  18183438 gatctatttgatatatagagaaataattcagggactaatttgatggaaatattattacagaaaggttacattcctcaatcatcttcaacctcttttca 18183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 31802903 - 31803053
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   ||| |||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  31802903 cttttttagtttattttgtacacatatgtttcaatgatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttttatataacgtagg 31803001  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  31803002 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 31803053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 33680010 - 33679859
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  ||| |||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| ||| |    
T  33680010 cttttttacttcattttgtacatatatgcttcaatgatcaatttgatatctgattaaacaattcagggacttatttgatgggtttttaatataacgtatg 33679911  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  ||| ||||||||||||||||    
T  33679910 gatctatttgatagatagagaaataattcagggacaaatttgatggaaatat 33679859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 6576425 - 6576576
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  |||||||||  |||| || || | ||| ||||||  ||||||||||||||  |||| |||||| ||| |    
T  6576425 cttttttacttcattttgtacatatatgcttcaaggatcaatttgatatctgataaaacaattcagggacttatttgatgggtttttaatataacgtatg 6576524  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     | | ||||||||  |||  |||||||| |   |||||||||||||||||||    
T  6576525 aatctatttgatagatagaaaaataattcaggaactaatttgatggaaatat 6576576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 35478855 - 35478705
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    |||||||||| ||| |  ||||||||||  | |||||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| ||| |     
T  35478855 ttttttacttcattttatacatatatgcttcgaggatcaatttgatatctgattaaacaattcagggacttatttgatgggtttttaatataacgtatga 35478756  T
Q  119 aacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    | | ||||||||  |||  |||||||| |  ||||||||||||||||||||    
T  35478755 atctatttgatagatagaaaaataattcagggactaatttgatggaaatat 35478705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26224868 - 26224784
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| |||||||   | ||||||| ||| ||||||||||| ||||    
T  26224868 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatttgttgtgaaaattcaaggacctatttgatggtctttt 26224784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 33600467 - 33600383
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||||||| || ||||   | ||||||| ||| |||||||| |||||||    
T  33600467 tttttactttgttcagcaaatgtatgcaccaaggatcacattgatatctgttgtgaaaattcaaggacatatttgatagtatttt 33600383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 34777452 - 34777368
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  34777452 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttatgaaaattcaaggacctatttgatggtatttt 34777368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 161197 - 161413
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  161197 caaattgtgtctctttacttttttactttgttatgcacatatatgcaccaaggatcacgttgacatctgtttaaataattcaaggacttatttgatggta 161296  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||| |||     
T  161297 tttttatataacgtagggatcaatttgatacttaggcaaataatttaaggactaatttgatggaaatatttcgacagaaaggttgcattcgttcatcttg 161396  T
Q  201 aacctcttttcattaca 217  Q
    || | ||||||||||||    
T  161397 aatcccttttcattaca 161413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26581903 - 26581684
Alignment:
Q  1 caaattgtgtctctatactttttt-actttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggt 99  Q
    |||||||||||||| ||||||||| |||||||| |||||||||| ||| ||||| |||||||||||| | ||| |||||||||| | |||||||||||||    
T  26581903 caaattgtgtctctttactttttttactttattctgcacatatacgcatcaagggtcacattgacatctatttgaataattcaaggccttatttgatggt 26581804  T
Q  100 atttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaactt 199  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| | || ||| ||| |||||||||||||| |||    
T  26581803 atttttatataatgtagggatcgatttgatacttaggcaaataatttaaggactaatttgatggaaatttttcgacaaaaaagttgcattcattcatctt 26581704  T
Q  200 caacctcttttcattacaac 219  Q
    ||||||||||||||||||||    
T  26581703 caacctcttttcattacaac 26581684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4047146 - 4047358
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| ||||||||||||||     |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||    
T  4047146 caaattgtgtctctttacttttttacttt-----gcacatatatgcaccatggatcacatcgacatttgtttaaataattcaaggacttatttgatgata 4047240  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||||| |||||||||||| | |||||||||||||  ||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||| || ||||    
T  4047241 tttttaaataatgtagggatcaatttgatacttagaaaaataatttaaggactaatttgatggagatatttcaacaaaaaggttgcattcatccatcttc 4047340  T
Q  201 aacctcttttcattacaa 218  Q
    || |||||||| ||||||    
T  4047341 aatctcttttctttacaa 4047358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 20941547 - 20941718
Alignment:
Q  48 ccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataattta 147  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||  ||| |||||||  |||||||| | | | ||||||||  ||| ||||||||| |    
T  20941547 ccaaagatcacattgacatctgtttaaataattcaaggacttattcaatgatattttttaataatgtaagaatcaatttgatatataggcaaataattaa 20941646  T
Q  148 acgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattacaac 219  Q
    | |||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  20941647 aggactaatttgatggaaatatttcgacagaaaggttgcattcattcatcttcaacctcttttcattacaac 20941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 40151053 - 40150849
Alignment:
Q  3 aattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatt 102  Q
    |||||||||||| || ||||||||||| || || ||||||||||| ||| ||||| ||||| || || ||| |||||||||  |||||||||||||| ||    
T  40151053 aattgtgtctctttatttttttactttgttctgaacatatatgcatcaaagatcaaattgatatctgcttatataattcaagaacttatttgatggtttt 40150954  T
Q  103 tttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaa 202  Q
    |  |||||||||||||| |||||||||| |||| ||||||||| || |||||||||| ||| |||||    ||| |||| || |||||||||| ||||||    
T  40150953 tgcatataatgtagggatcgatttgatagttagtcaaataattcaaggactaatttgctggtaatattatgacaaaaagattacattcattcatcttcaa 40150854  T
Q  203 cctct 207  Q
    |||||    
T  40150853 cctct 40150849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 40151907 - 40152087
Alignment:
Q  21 ttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaa 120  Q
    ||||||||| || || ||| ||||||| ||| ||||| |||||  | |||||| |||||||||  |||||||||||||| |||  ||||||||||||||     
T  40151907 ttttactttgttctgaacacatatgcatcaatgatcaaattgatttctgtttatataattcaagaacttatttgatggtttttgcatataatgtagggat 40152006  T
Q  121 cgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaa 202  Q
    |||||| ||| |||| ||||||||| |  |||||||||| ||| ||  |||  ||||||||||| |||||||||| ||||||    
T  40152007 cgatttaatagttagtcaaataattcatggactaatttgctggtaaattat-gacagaaaggttacattcattcatcttcaa 40152087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 363229 - 363356
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||| ||| || |||||||||||||  ||||| ||| ||||| || || ||||||||||||| |||||||||||||||  ||| ||||||| |||    
T  363229 acttttttattttgttctgcacatatatgcttcaagggtcaaattgatatctgattaaataattcaaggacttatttgatggt-ctttaatataatatag 363327  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
     || | |||||||| |||| |||||||||    
T  363328 agatcaatttgatagttagtcaaataatt 363356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 36168 - 36018
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||||||||||  ||||||||||||||| ||||||||||| |||||    
T  36168 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatatgattaaataattcagggacttatttgatggt-tttttatataacgtagg 36070  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  36069 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 36018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 91195 - 91045
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| ||| |    
T  91195 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttttatataacgtatg 91097  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  |||||||| |  |||||||||||||| |||||    
T  91096 gatctatttgatagatagagaaataattcagggactaatttgatggcaatat 91045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 4415578 - 4415467
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattg-acatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    |||||||||| || |||| ||||||||  ||||||||| | || | || |||||| ||||||||| ||||||||||| ||| |||  ||||||| |||||    
T  4415578 tttttactttgttctgcaaatatatgcttcaaggatcaaaatggatatatgtttatataattcaatgacttatttgacggtttttgaatataatttaggg 4415479  T
Q  119 aacgatttgata 130  Q
    | ||||||||||    
T  4415478 atcgatttgata 4415467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 7744501 - 7744646
Alignment:
Q  75 ataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaa 174  Q
    ||||||||| |||| |||||||| | |||| | ||||| |||||| ||||| |||   |||||| | ||||||| ||||||| ||||| |||||| |  |    
T  7744501 ataattcaaggactgatttgatgtt-ttttaacataatctagggatcgattagatggatagccataaaatttaaggactaatctgatgtaaatattttga 7744599  T
Q  175 cagaaaggttgcattca--ttcaacttcaacctcttttcattacaac 219  Q
    |||||||||| |||  |  |||| |||||||||||||||||||||||    
T  7744600 cagaaaggttacatgaagattcatcttcaacctcttttcattacaac 7744646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 37418008 - 37418177
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||| ||||||||||||| | |||| |||||| ||||  | | ||||||||  |||  |||||||| ||    
T  37418008 caaggatcaatttgatatctgattaaacaattcaaggacttatttgatgattttttaatataacgtagaaatctatttgatagatagagaaataattcaa 37418107  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
     |||||||||||||| |||||    ||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  37418108 ggactaatttgatggtaatattattacagaaatgttacattcctcaatcatcttcaacctcttttcatta 37418177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 25620433 - 25620553
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatata 170  Q
    ||||| |||||| |||||||||||||| | |||| |||||| ||| ||| | ||||||||  |||   ||||||| || ||||||||||||||||||||     
T  25620433 ttaaacaattcagagacttatttgatgat-ttttaatataacgtatggatctatttgatagatagagcaataattcaaggactaatttgatggaaatatt 25620531  T
Q  171 tcaacagaaaggttgcattcat 192  Q
       ||||||||||| |||||||    
T  25620532 attacagaaaggttacattcat 25620553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 17948208 - 17948315
Alignment:
Q  114 tagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattca--ttcaacttcaacctcttttc 211  Q
    |||||| |||||||||   |||||| | ||||||| ||||||| ||||| |||||| |  ||||||||||| |||  |  |||| |||||||||||||||    
T  17948208 tagggatcgatttgatggatagccataaaatttaaggactaatctgatgtaaatattttgacagaaaggtttcatgaagattcatcttcaacctcttttc 17948307  T
Q  212 attacaac 219  Q
    ||||||||    
T  17948308 attacaac 17948315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 40561053 - 40561137
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||||||| || ||||   | ||||||| ||| ||||||||||||||||    
T  40561053 tttttactttgttcagcaaatgtatgcaccaaggatcacattgatatctgttgtgaaaattcaaggacctatttgatggtatttt 40561137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 42880076 - 42880223
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatata 170  Q
    ||||| ||||||  ||||||||||||| | |||| |||||  ||| ||| | ||||||||  |||  ||| |||| || |||||||||||||| |||||     
T  42880076 ttaaacaattcagggacttatttgatgattttttaatatagcgtacggatctatttgatagatagagaaacaattcaaggactaatttgatggtaatatt 42880175  T
Q  171 tcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
      |||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  42880176 ataacagaaatgttacattcctcaatcatcttcaacctcttttcatta 42880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 39664096 - 39664012
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  39664096 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacctatttgatggtatttt 39664012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 7150205 - 7150420
Alignment:
Q  4 attgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtattt 103  Q
    ||||||||||| |||||||||||||| || | ||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  7150205 attgtgtctctttacttttttactttgttctacacatatatgcgccaaggatcacattgacatctgtttaaataattaaaggacttatttgatggtattt 7150304  T
Q  104 ttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaac 203  Q
    |||||||||||||||| ||| ||||||||||  |||||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  7150305 ttatataatgtagggatcgacttgatacttaagcaaataatttaaggattaatttgatggaaatatttcgacagaaaggttgcattcattcatcttcaac 7150404  T
Q  204 ctcttttcattacaac 219  Q
    |  |||||||||||||    
T  7150405 ccattttcattacaac 7150420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4614300 - 4614512
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||| ||||||| |||||||| ||||| || |  ||||||||||| ||||||||| ||||| |||| |||| ||||||||| ||||||||  ||||||    
T  4614300 caaattatgtctctttacttttt-actttgtttttaacatatatgcatcaaggatcaaattgaaatttttttacataattcaaggacttattaaatggta 4614398  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||| |||| |||||||||  ||||||||| |||  ||||||| |    |||||||||||||| |||||     |||||| ||||||||||||||  |||    
T  4614399 ttttcatat-atgtagggattgatttgatagttactcaaataaatatgggactaatttgatggtaatattatggcagaaatgttgcattcattcattttc 4614497  T
Q  201 aacctcttttcatta 215  Q
    |||||||||||||||    
T  4614498 aacctcttttcatta 4614512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 26397181 - 26397321
Alignment:
Q  77 aattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaaca 176  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| ||| |||| |  ||| |||||||||||| ||| || |||||| |||||| |  |||    
T  26397181 aattcaaggacttatttgatgatatttttatataatgtagggatcgaattgaaa--tagacaaataatttaatgacaaacttgatgaaaatattttgaca 26397278  T
Q  177 gaaaggttgcattcattcaacttcaacctcttttcattacaac 219  Q
    |||| ||||| || ||||| ||||||||||||||||| |||||    
T  26397279 gaaatgttgctttgattcatcttcaacctcttttcataacaac 26397321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 39294440 - 39294539
Alignment:
Q  31 ttatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgata 130  Q
    ||||||||||||||||  ||||||||| ||||| ||||  ||||||||||||| ||||||||||||||  |||| |||||||||||||| | ||||||||    
T  39294440 ttatgcacatatatgcttcaaggatcaaattgatatttaattaaataattcaatgacttatttgatgggtttttaatataatgtagggatcaatttgata 39294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 9590709 - 9590582
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatgg--tatttttatataatgt 114  Q
    ||||||||||||| || ||||||||||| |   ||| |||| ||||| || |||||| ||||||||| |||||||||| |||  | |||| |||||||||    
T  9590709 acttttttactttgttctgcacatatatacttaaagaatcaaattgatatatgtttatataattcaaggacttatttggtggatttttttaatataatgt 9590610  T
Q  115 agggaacgatttgatacttagccaaata 142  Q
    ||||| || |||||||||||| ||||||    
T  9590609 agggatcgctttgatacttagtcaaata 9590582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 13438369 - 13438273
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatt 145  Q
    ||||||||| ||||| || || ||||||||||||| ||||||||| ||||  |||| |||||||||| ||| |||||||||| |||| |||||||||    
T  13438369 caaggatcaaattgatatctgattaaataattcaaggacttattttatgggtttttaatataatgtaaggatcgatttgatagttagtcaaataatt 13438273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 230978 - 230867
Alignment:
Q  34 tgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatactt 133  Q
    |||||||||||||  | ||||||| ||||| || || ||||||||||||| ||||||||||||||  |||| ||||||||||  ||  ||||||||| ||    
T  230978 tgcacatatatgcttcgaggatcaaattgatatctgattaaataattcaatgacttatttgatgggtttttaatataatgtaatgattgatttgatagtt 230879  T
Q  134 agccaaataatt 145  Q
    || |||||||||    
T  230878 agtcaaataatt 230867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 10543926 - 10544104
Alignment:
Q  37 acatatatgcaccaaggatcacattgacatttgtttaaataattcaaag-acttatttgatggtatttttatataatgtagggaacgatttgatacttag 135  Q
    ||||||||||| ||| ||||| ||||| |  |||||| |||| | |||| |||||||||||| | |||| |||||||||| ||| | |||||||| ||||    
T  10543926 acatatatgcatcaatgatcaaattgatacctgtttatataaattaaaggacttatttgatgattttttcatataatgtaaggatcaatttgatagttag 10544025  T
Q  136 ccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcatt 214  Q
     ||||||||| |   | || |||| ||| |||||    |||||||| ||  ||||||||| ||||||||||||||||||    
T  10544026 tcaaataattcatgaattagtttgctggtaatattatgacagaaagattatattcattcatcttcaacctcttttcatt 10544104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 13449890 - 13449986
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatt 145  Q
    ||||||||| ||||| || || |||||||||||||  |||||||| ||||  |||| ||||| |||| ||| |||||||||| |||| |||||||||    
T  13449890 caaggatcaaattgatatctgattaaataattcaagaacttattttatgggtttttaatatattgtaaggatcgatttgatagttagtcaaataatt 13449986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 48646062 - 48645978
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  48646062 tttttactttattcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 48645978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 44557374 - 44557223
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  ||| |||||  |||| || |  ||||| ||||||  ||||||||||||||  |||| |||||||||| |    
T  44557374 cttttttacttcattttgtacatatatgcttcaaagatcaatttgatatctaattaaacaattcagggacttatttgatgggtttttaatataatgtatg 44557275  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     | | ||||||||  |||  |||||||| |  ||||||||||||||||||||    
T  44557274 aatctatttgatagatagaaaaataattcagggactaatttgatggaaatat 44557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 44973801 - 44973898
Alignment:
Q  34 tgcacatatatgcaccaaggatcacattg-acatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgata 130  Q
    |||| ||||||||  ||||||||| |||| | || |||||| | ||||||| ||||||||||||||  |||| ||||||| || ||| ||||||||||    
T  44973801 tgcaaatatatgcttcaaggatcaaattggatatatgtttataaaattcaaggacttatttgatggatttttaatataatttaaggatcgatttgata 44973898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 2828008 - 2828127
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||| ||||||| ||||||| | ||||||||  |||  |||||||| |     
T  2828008 caaggatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttatatataacgtagggatctatttgatagatagataaataattcag 2828106  T
Q  149 cgactaatttgatggaaatat 169  Q
     || ||||||||||| |||||    
T  2828107 ggattaatttgatggcaatat 2828127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 27383715 - 27383771
Alignment:
Q  75 ataattcaaagacttatttgatggtattttt-atataatgtagggaacgatttgata 130  Q
    ||||||||| ||||||||||| ||| ||||| ||||||| |||||| ||||||||||    
T  27383715 ataattcaaggacttatttgacggtttttttaatataatttagggatcgatttgata 27383771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 43508038 - 43508118
Alignment:
Q  21 ttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtat 101  Q
    ||||||||| ||  ||| || ||||||| |||||||||||||| |||||||   ||||||||| |||  ||||||||||||    
T  43508038 ttttactttgttcagcaaatgtatgcacaaaggatcacattgatatttgttatgataattcaaggaccaatttgatggtat 43508118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 49523941 - 49524025
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| | | |||||||   | ||||||| ||| ||||||||||||||||    
T  49523941 tttttactttgttcagcaaatgtatgcaccaaggatcacagttatatttgttgtgaaaattcaaggacctatttgatggtatttt 49524025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 24285562 - 24285780
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    ||||||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |  |||||||||||||    
T  24285562 caaattgtgtctcttaacctttttactttattttgcacatatatgcaccaaggatcacattgacatgtgtttaaataagtcaagggtttatttgatggta 24285661  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||  |||| |||||||||||||| |  ||| |||||||||||||||||| ||||    
T  24285662 tttttatataatgtagggatcgatttgatacttaggcaaataatttaaatactagtttgatggaaatattttgacataaaggttgcattcattcatcttc 24285761  T
Q  201 aacctcttttcattacaac 219  Q
    ||| |||||||||||||||    
T  24285762 aacatcttttcattacaac 24285780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17807807 - 17807589
Alignment:
Q  1 caaattgtgtctctatactttttt-actttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggt 99  Q
    |||||||||||||| || |||||| ||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||      
T  17807807 caaattgtgtctctttaatttttttactttattatgcatatatatgaaccaaggatcacattgacgtctgtttaaataattcaaagacttatt-gatgac 17807709  T
Q  100 atttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaactt 199  Q
    ||||||||||||||| |||| | ||||||||||| | |||||||||||  |||||||||||||||||||| || ||| |||||||||||||||||| |||    
T  17807708 atttttatataatgttgggatcaatttgatacttcggcaaataatttagggactaatttgatggaaatatttcgacaaaaaggttgcattcattcatctt 17807609  T
Q  200 caacctcttttcattacaac 219  Q
    ||||||||||||||||||||    
T  17807608 caacctcttttcattacaac 17807589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 10771240 - 10771074
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||  ||||| ||| |||| ||||||||| ||    
T  10771240 caaggatcaaattgacatttgtttatataattcaaggacttatttgatgatattttcatataatgtagggattgatttaataattagtcaaataattcaa 10771141  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcatta 215  Q
    ||||||||||||||| |||||  | ||||||| ||| |||||||||| |||||||||||||||||||    
T  10771140 cgactaatttgatggtaatattacgacagaaatgttacattcattcatcttcaacctcttttcatta 10771074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11720710 - 11720494
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||| ||||| ||   ||||||||||||||||||||||||||| ||| | |||||| | ||||| ||||||||||||| ||    
T  11720710 caaattgtgtctctttacttttt-actttgttcaacacatatatgcaccaaggatcacattgtcatatttttaaaaacttcaaggacttatttgatgata 11720612  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||||   ||||||||| | ||||||||||  ||| |||| ||||||| ||| ||||||||||||| || |  ||| || |||||||||||||||  |||    
T  11720611 tttttcactaatgtaggaatcgatttgatatatagacaaacaatttaaggaccaatttgatggaaagattttgacaaaatggttgcattcattcattttc 11720512  T
Q  201 aacctcttttcattacaa 218  Q
    ||||||||||||||||||    
T  11720511 aacctcttttcattacaa 11720494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 11031954 - 11031826
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| ||||||||||| ||||  |||| |||| ||||| || || ||||||||||||| ||||||||||| ||  |||| |||| ||||||    
T  11031954 acttttttactttgttatgcacatacatgcttcaagaatcaaattgatatctgattaaataattcaaggacttatttgacgggtttttaatattatgtag 11031855  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
    ||| |||||||||| |||| |||||||||    
T  11031854 ggatcgatttgatagttagtcaaataatt 11031826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 25371574 - 25371379
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    ||||||||||||| |  ||| | ||||  ||||||||| ||||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||| ||    
T  25371574 tttttactttattttatacacacatgcttcaaggatca-attgatatatgattaaacaattcagtgacttatttgatgggtttttaatataaggtagtga 25371476  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcatta 215  Q
     |||||||||| |||| ||||||||| || |||||||||||||| |||||    ||||||| ||| || |||||||| |||||||||||||||||||    
T  25371475 tcgatttgatagttagacaaataattcaaggactaatttgatggtaatattattacagaaatgttacatttcattcatcttcaacctcttttcatta 25371379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 9186178 - 9186288
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    ||||||||||| || |||||||||||||  ||||||||| ||||| || || ||||||||||||| ||||||||||||||  |||| |||||||| | ||    
T  9186178 ttttttactttgttctgcacatatatgcttcaaggatcaaattgatatatgattaaataattcaaggacttatttgatgggtttttaatataatgcatgg 9186277  T
Q  119 aacgatttgat 129  Q
    | |||||||||    
T  9186278 atcgatttgat 9186288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 11790093 - 11790213
Alignment:
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattc--attcaact 198  Q
    |||||||||||||||| || ||||||||||  ||| |||||||||||| ||| ||||||||| |||||| |   |||||| |||||||||  ||||| ||    
T  11790093 tttttatataatgtagagatcgatttgataaatagacaaataatttaaggaccaatttgatgaaaatattttgccagaaatgttgcattcatattcatct 11790192  T
Q  199 tcaacctcttttcattacaac 219  Q
    |||||||||||| ||||||||    
T  11790193 tcaacctcttttgattacaac 11790213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 10269080 - 10269208
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| ||||||||||| ||||  ||||||| | ||||| || || ||||||||| ||| ||||||||||| ||  |||| ||||||||||     
T  10269080 acttttttactttgttatgcacatacatgcttcaaggattaaattgatatctgattaaataatgcaaggacttatttgacgggtttttaatataatgtaa 10269179  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
    ||| |||||||||| || | |||||||||    
T  10269180 ggaccgatttgatagtttgtcaaataatt 10269208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 12515593 - 12515497
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatt 145  Q
    ||||||||| ||||| || || ||||||||||||| ||||||||||||||  |||| ||||||||||||||  ||||||||| |||| |||||||||    
T  12515593 caaggatcaaattgatatctgattaaataattcaaggacttatttgatgggtttttaatataatgtagggattgatttgatagttagtcaaataatt 12515497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 12516192 - 12516021
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    ||||||||| |||||  | |||||| |||||||||  |||||||||||||  |||| |||||||||||||| |||||||||| |||| ||| |||||||     
T  12516192 caaggatcaaattgatttatgtttatataattcaagtacttatttgatggctttttaatataatgtagggatcgatttgatagttagacaattaatttag 12516093  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
     ||||||| |||||| || ||    || |||||  | || |||||||| ||||| |||||||||||||||||    
T  12516092 ggactaatatgatggtaaaattattactgaaagactacatttcattcatcttcatcctcttttcattacaac 12516021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11789967 - 11790049
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaa 83  Q
    |||| ||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||| | |||||  |||||||    
T  11789967 caaactgtgtctctttacttttttactttgttatgcaaatatatgcatcaaggatcacattgacatatatttaacaaattcaa 11790049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 31822719 - 31822838
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| ||||||| | ||||||||  |||  |||||||| |     
T  31822719 caaggatcaatttgatatctgattaaacaattcagggacttatttgatggt-tttttatataacgtagggatctatttgatagatagataaataattcag 31822817  T
Q  149 cgactaatttgatggaaatat 169  Q
     |||||||||||||| |||||    
T  31822818 ggactaatttgatggcaatat 31822838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 33749223 - 33749111
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  33749223 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggtttttttatataacgtagg 33749124  T
Q  118 gaacgatttgata 130  Q
    || | ||||||||    
T  33749123 gatctatttgata 33749111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26239757 - 26239673
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  26239757 tttttactttgttgagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaatgacttatttgatggtatttt 26239673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 38882163 - 38882012
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||| ||||| ||| || ||| ||||||  |||||||||  |||| || || ||||| ||||||  |||| |||||||||  |||| ||||||||||||    
T  38882163 cttttgtacttaattttgtacacatatgcttcaaggatcaatttgatatctgattaaacaattcagggactaatttgatggatttttaatataatgtagg 38882064  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  || ||||| |  |||||||||||||| |||||    
T  38882063 gatctatttgatagatagagaagtaattcagggactaatttgatggtaatat 38882012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 461897 - 461800
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  ||||||||||||||| |||| |||||| ||| ||| | ||||||||  |||   ||||||| || ||||||||||||||||||||    
T  461897 ttaaacaattcagggacttatttgatggt-ttttaatataacgtatggatctatttgatagatagaacaataattcaaggactaatttgatggaaatat 461800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 9672468 - 9672406
Alignment:
Q  42 tatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  9672468 tatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 9672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 1321665 - 1321784
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||   |||||||||||||| |||| |||||| ||||||| | ||||||||  |||  |||||||| |     
T  1321665 caaggatcaatttgatatctgattaaacaattcaggaacttatttgatggt-ttttaatataacgtagggatctatttgatagatagtgaaataattcag 1321763  T
Q  149 cgactaatttgatggaaatat 169  Q
     ||||||| ||||||||||||    
T  1321764 ggactaatatgatggaaatat 1321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 8609122 - 8609038
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  8609122 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 8609038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 13107688 - 13107604
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  13107688 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 13107604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 38548036 - 38548120
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  38548036 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 38548120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 42895572 - 42895488
Alignment:
Q  85 gacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||||||||||| | |||| |||||| ||||| | | ||||||||  |||  |||||||| || |||||||||||||| |||||    
T  42895572 gacttatttgatgattttttaatataacgtaggaatctatttgatagatagagaaataattcaaggactaatttgatggtaatat 42895488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 23876559 - 23876360
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||  ||| |||||||||||||||||||||||||||||    
T  23876559 ttttttactttattatgcacatatatgcaccaaggatcacattgacatcagtttaaaaaatttaagtactaatttgatggtatttttatataatgtaggg 23876460  T
Q  119 aacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattacaa 218  Q
    | || |||||||||||| |||||||||||| |||||||||||||||||||| |  |||||||||||||||| ||||| ||||||||||||||||||||||    
T  23876459 atcggtttgatacttaggcaaataatttaaggactaatttgatggaaatattttgacagaaaggttgcattaattcatcttcaacctcttttcattacaa 23876360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 35862794 - 35862577
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||| |||    
T  35862794 caaattgtgtctctttacttttttactttgttctgcacatatatgcaacaaggatcacattgacatctgtttaaataattcaaggacttatctgattgta 35862695  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||  | | |||||||| |||| |||| ||||||| |||||||||||||||||||| || ||| ||||||| |||||||||| ||||    
T  35862694 tttttatataatgtagaaatcaatttgatatttaggcaaacaatttaaggactaatttgatggaaatatttcgacaaaaaggtttcattcattcatcttc 35862595  T
Q  201 aacctcttttcattacaa 218  Q
    ||||| ||||||||||||    
T  35862594 aaccttttttcattacaa 35862577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 22219320 - 22219103
Alignment:
Q  2 aaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta- 100  Q
    ||||||||| ||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||| ||     
T  22219320 aaattgtgtatctttacttttgtactttgttctgcacatatatgcaccaaggatcgcattgacatctgtttaaataattcaaggatttatttgatgatat 22219221  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||| ||||| | |||| |||||||| |||||||||||| ||||||||||||| |||||| || ||| |||||||| ||||||||| ||||    
T  22219220 tttttatataatgcagggatcaatttaatacttaggcaaataatttaaggactaatttgatgaaaatatttcgacataaaggttggattcattcatcttc 22219121  T
Q  201 aacctcttttcattacaa 218  Q
    ||||| ||| ||||||||    
T  22219120 aacctatttccattacaa 22219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 32843774 - 32843581
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    |||||||||| || |  ||||||||||| ||| ||||| ||||| || |||||| ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  32843774 tttttactttgttctaaacatatatgcatcaatgatcaaattgatatctgtttatataattcaaggacttattttatggttttttcatataatgtaggga 32843675  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcatt 214  Q
     |||||||||| |||  ||||||||| |  |||||||||||||| |||||    || |||||||| |||||||||| ||||||||||||||||||    
T  32843674 tcgatttgataattacgcaaataattcatggactaatttgatggtaatattatgac-gaaaggttacattcattcatcttcaacctcttttcatt 32843581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 24845692 - 24845884
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    |||||||||| ||  ||| || |||||||||| ||||||||||| || ||||   ||||||||||||||||||||||||||||||||  |||| ||||||    
T  24845692 tttttactttgttcagcaaatgtatgcaccaaagatcacattgatatatgttgtgataattcaaagacttatttgatggtatttttaactaatttaggga 24845791  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttca 212  Q
    |||||||||| | ||| |||| |||  || ||| ||||||||||||| || |  | |||| ||||| |||||||||  | |||||||||||||    
T  24845792 acgatttgatgcatagacaaacaatagaaggaccaatttgatggaaagattttgatagaagggttgaattcattcatttacaacctcttttca 24845884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 17260498 - 17260610
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || | |||||||||||  ||||||||| ||||| ||||||||| ||||||||| || |||||||||||| |||| ||||||| |||    
T  17260498 acttttttactttgttctacacatatatgcttcaaggatcaaattgatatttgtttatataattcaaggatttatttgatggt-ttttaatataatttag 17260596  T
Q  117 ggaacgatttgata 130  Q
    ||| ||||||||||    
T  17260597 ggatcgatttgata 17260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 13466078 - 13466186
Alignment:
Q  111 atgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctctttt 210  Q
    ||||||||| ||||||||||| ||| |||| | ||| | ||| |||||| |||||| || |  ||||||  ||||||||||||||  |||||||||||||    
T  13466078 atgtagggatcgatttgatacatagacaaacattttcaggaccaatttgttggaaagattttgacagaagagttgcattcattcattttcaacctctttt 13466177  T
Q  211 cattacaac 219  Q
    |||||||||    
T  13466178 cattacaac 13466186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 31886286 - 31886135
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    ||||||||||| ||| || ||||||||||  ||| |||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| ||| |    
T  31886286 cttttttacttaattttgtacatatatgcttcaacgatcaatttgatatctgattaaacaattcagggacttatttgatggatttttaatataacgtatg 31886187  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     | | ||||||||  |||  ||||||||||  ||||||||||||||||||||    
T  31886186 aatctatttgatagatagagaaataatttagggactaatttgatggaaatat 31886135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 54093849 - 54093960
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgac-atttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    |||||||||| ||||||| ||||||||  |||| |||| |||||  || |||||| ||||||||| ||||||||||| ||| |||| ||||||| || ||    
T  54093849 tttttactttgttatgcaaatatatgcttcaagaatcaaattgaatatatgtttatataattcaatgacttatttgacggttttttaatataatttaagg 54093948  T
Q  119 aacgatttgata 130  Q
    | ||||||||||    
T  54093949 atcgatttgata 54093960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 49495345 - 49495204
Alignment:
Q  75 ataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaa 174  Q
    ||||||||| |||| |||||||| | |||  | ||||| |||||| ||||||||||  |||||| | ||||||| ||||||| ||||| |||||| |  |    
T  49495345 ataattcaaggactgatttgatgtt-tttaaacataatctagggatcgatttgatagatagccataaaatttaaggactaatctgatgtaaatattttga 49495247  T
Q  175 cagaaaggttgcat--tcattcaacttcaacctcttttcatta 215  Q
    |||||||||| |||    ||||| |||||||||||||||||||    
T  49495246 cagaaaggttacatgaagattcatcttcaacctcttttcatta 49495204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 17516139 - 17516225
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtattttta 106  Q
    |||||||||| ||| ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||||    
T  17516139 tttttactttgttaagcaaatgtatgcaccaaggatcacaatgatatctgttgtgaaaattcaaggacctatttgatggtattttta 17516225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 30501781 - 30501630
Alignment:
Q  68 tgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaat 167  Q
    |||||| |||||||||  |||||||||||||| |||| |||||||||| ||| | ||||||||  ||| |||||| || |  ||||||| |||||| ||     
T  30501781 tgtttatataattcaataacttatttgatggttttttaatataatgtaaggatcaatttgata-gtagacaaatacttcagggactaatatgatggtaaa 30501683  T
Q  168 atatcaacagaaaggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
    ||     ||||| || | || |||||||| |||||||||||||||||||||||    
T  30501682 attattgcagaatggctacatttcattcatcttcaacctcttttcattacaac 30501630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30599522 - 30599438
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| || |||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  30599522 tttttactttgttctgcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 30599438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 42280313 - 42280401
Alignment:
Q  16 tacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||| ||||||    
T  42280313 tacttttttactttgttcagcaaatgtatgcaccaaggatcacaatgatatatgttgtgaaaattcaaggacttatttgatgatatttt 42280401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 51685420 - 51685504
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| ||||||||||||| ||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  51685420 tttttactttgttcagcaaatatatgcaccaacgatcacagtgatatatgttgtgaaaattcaaggacttatttgatggtatttt 51685504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 23774894 - 23775063
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    |||||||||  |||| || || ||||| ||||||   |||||||||||| | |||| |||||| ||||||| | ||||||||  |||  |||||||| ||    
T  23774894 caaggatcaatttgatatctgattaaacaattcaggtacttatttgatgattttttaatataacgtagggatctatttgatagatagagaaataattcaa 23774993  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
     |||||||||||||  |||||    ||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  23774994 agactaatttgatgataatattattacagaaatgttacattcctcaatcatcttcaacctcttttcatta 23775063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 45256206 - 45256109
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| |||||| | |||||||||||||| |||| |||||| ||||||| | ||||||||  |||  |||||||| |  ||||||| ||||||||||||    
T  45256206 ttaaacaattcagaaacttatttgatggt-ttttaatataacgtagggatctatttgatagatagtgaaataattcagggactaatatgatggaaatat 45256109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 45897873 - 45897776
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  ||||||||||||||| ||||||||||| ||||||| | ||||||||  |||  |||||||| |  || ||||||||||| |||||    
T  45897873 ttaaacaattcagggacttatttgatggt-tttttatataacgtagggatctatttgatagatagataaataattcagggattaatttgatggcaatat 45897776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 48634636 - 48634734
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  ||||||||||||| | |||| |||||| ||| ||| | ||||||||  |||  |||||||| || |||||||||||||| |||||    
T  48634636 ttaaacaattcagggacttatttgatgattttttaatataacgtatggatctatttgatagatagagaaataattcaaggactaatttgatggtaatat 48634734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 33050748 - 33050836
Alignment:
Q  133 tagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattca--ttcaacttcaacctcttttcattacaac 219  Q
    |||||| | ||||||| ||||||| ||||| |||||| |  ||||||||||| |||  |  |||| |||||||||||||||||||||||    
T  33050748 tagccataaaatttaaggactaatctgatgtaaatattttgacagaaaggtttcatgaagattcatcttcaacctcttttcattacaac 33050836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 2225487 - 2225403
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  2225487 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 2225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 2377825 - 2377909
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  2377825 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 2377909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 7884208 - 7884124
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  7884208 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 7884124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 35905040 - 35904956
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  35905040 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaatgacctatttgatggtatttt 35904956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 41978557 - 41978641
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  41978557 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 41978641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 54899262 - 54899346
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  54899262 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaggacctatttgatggtatttt 54899346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13035602 - 13035791
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  13035602 caaattgtgtctctttacttttttactttgttttgcacatatatgcaccaaggatcacattgacatctgtttaaataattcaaggacttatttgatggta 13035701  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattc 190  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||| || ||||||||| ||||||| || | |||||||||||||||    
T  13035702 tttttatataatgtagggatcgatttgatacttaagcaaataatttaaggattaatttgattgaaatatttcgaaagaaaggttgcattc 13035791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7402679 - 7402897
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||| ||||| |||||||||||||| || ||||||||||||||  | ||||||||||||||| |||||||||||||||| |||||| ||||| |||    
T  7402679 caaattgtttctctttacttttttactttgttttgcacatatatgcaaaagggatcacattgacatatgtttaaataattcaaggacttacttgatcgta 7402778  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||| ||||| | | ||||||| ||||| |||||||||||| ||||||||||||| |||||| || | ||||| |||||||| ||||| ||||    
T  7402779 tttttatataacgtaggaatcaatttgattcttaggcaaataatttaaggactaatttgatgaaaatatttcgatagaaaagttgcattaattcatcttc 7402878  T
Q  201 aacctcttttcattacaac 219  Q
    |||||||||||||||||||    
T  7402879 aacctcttttcattacaac 7402897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 367550 - 367695
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| ||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  367550 caaattgtgtctctttacttttttactttattctgtacatatatgcgccaatgatcacattgacatttgtttaaataattcaaggacttatttgatggta 367649  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataattt 146  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||    
T  367650 tttttatataatgtagggatcgatttgatacttaggaaaataattt 367695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 11683401 - 11683600
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || |||||||||||||   ||| |||| ||||| ||||  ||||||||||||| ||||||||||||||  |||| |||||||||||    
T  11683401 acttttttactttgttctgcacatatatgctttaagaatcaaattgatatttaattaaataattcaaggacttatttgatgggtttttaatataatgtag 11683500  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcatta 215  Q
    ||| |||||||||| |||| ||||||||| |  |||||||||||||  |||||    | ||||| ||| || |||||||| |||||||||||||||||||    
T  11683501 ggatcgatttgatagttagtcaaataattcagggactaatttgatgataatattattatagaaatgttacatttcattcatcttcaacctcttttcatta 11683600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 34784878 - 34784707
Alignment:
Q  49 caaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaa 148  Q
    ||||||||| |||||  | |||||| ||||||||| ||||||||||||||| |||| |||||||| ||||| |||||||||| ||||  |||||||| ||    
T  34784878 caaggatcaaattgatttctgtttatataattcaaggacttatttgatggttttttaatataatggagggatcgatttgatagttagaaaaataattcaa 34784779  T
Q  149 cgactaatttgatggaaatatatcaacagaaaggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
     ||||||| |||||| || ||    ||| ||||| | || |||||||| |||||||||||||||||||||||    
T  34784778 ggactaatatgatggtaaaattattacataaaggctacatttcattcatcttcaacctcttttcattacaac 34784707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 12903628 - 12903777
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    |||| ||||| || || |||| |||||| ||||||||| | |||| | | |||| ||||||||  |||||||||||| ||||||| |||||||||| |||    
T  12903628 ttttaactttgttctgaacatgtatgcatcaaggatcaaactgacgtctatttatataattcatggacttatttgattgtattttcatataatgtaagga 12903727  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
     |||||||||| |||| ||||||||| |  |||||||||||||| |||||    
T  12903728 tcgatttgatatttagtcaaataattcatggactaatttgatggtaatat 12903777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 48705172 - 48705312
Alignment:
Q  80 tcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaa 179  Q
    |||| |||||||||||||||||||| |||||||||| ||| |  ||||||| |||| ||||||||| |  ||||||| |||||| || ||    | ||||    
T  48705172 tcaaggacttatttgatggtattttaatataatgtaaggatcagtttgatagttagacaaataattcatggactaatatgatggtaaaattattatagaa 48705271  T
Q  180 aggttgca-ttcattcaacttcaacctcttttcattacaac 219  Q
    ||| | || |||||||| ||||||||| |||||||||||||    
T  48705272 aggatacatttcattcatcttcaacctgttttcattacaac 48705312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 23954539 - 23954650
Alignment:
Q  19 ttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggg 118  Q
    ||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| |||||| |||||||||||||||| |||| |||||||||||||    
T  23954539 ttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcagagacttatttgatggttttttaatataatgtaggg 23954638  T
Q  119 aacgatttgata 130  Q
    | | ||||||||    
T  23954639 atctatttgata 23954650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 36756201 - 36756400
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| ||| || | ||||||||  |||||||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||     
T  36756201 acttttttacttcattttgtatatatatgcttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggatttttaatataacgtat 36756300  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca---ttcattcaacttcaacctcttttcat 213  Q
    | | | |||||||| ||||  |||||||| |  ||||||||||||| ||||||    ||||||||||| ||   || | ||| |||||||||||||||||    
T  36756301 gaatctatttgatagttagaaaaataattcagggactaatttgatgaaaatattattacagaaaggttacatttttgaatcatcttcaacctcttttcat 36756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 36761998 - 36762197
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| ||| || | ||||||||  |||||||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||     
T  36761998 acttttttacttcattttgtatatatatgcttcaaggatcaatttgatatctgattaaacaattcagggacttatttgatggatttttaatataacgtat 36762097  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgca---ttcattcaacttcaacctcttttcat 213  Q
    | | | |||||||| ||||  |||||||| |  ||||||||||||| ||||||    ||||||||||| ||   || | ||| |||||||||||||||||    
T  36762098 gaatctatttgatagttagaaaaataattcagggactaatttgatgaaaatattattacagaaaggttacatttttgaatcatcttcaacctcttttcat 36762197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 46995549 - 46995404
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||| ||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| |||||    
T  46995549 cttttttagtttattttgtacacatatgtttcaaggaacaatttgatatctgattaaacaattcagggacttatttgatggtttttttatataacgtagg 46995450  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatgg 163  Q
    || | ||||||||  |||  |||||||| |  ||||||||||||||    
T  46995449 gatctatttgatagatagaaaaataattcagggactaatttgatgg 46995404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 46811474 - 46811322
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| | | || ||||||||||  |||| ||||  |||| || || ||||| ||||||  ||||||||||||||  |||| |||||| |||     
T  46811474 acttttttacttcactttgtacatatatgcttcaagtatcaatttgatatatgattaaacaattcagggacttatttgatggatttttaatataacgtat 46811375  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    | | | ||||||||  |||  ||||||||||  ||||||||||||||||||||    
T  46811374 gaatctatttgatatatagaaaaataatttatggactaatttgatggaaatat 46811322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 69031 - 69094
Alignment:
Q  41 atatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    ||||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||||||||||    
T  69031 atatgcaccaaggatcacattgatatctgttatgataattcaaggacctatttgatggtatttt 69094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 3690918 - 3690723
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtaggga 119  Q
    ||||||||| ||| || ||  ||||||  |||||||||  |||| || || ||||| |||||| | |||||||||||||| |||| |||||| |||||||    
T  3690918 tttttacttaattttgtacccatatgcttcaaggatcaatttgatatctgattaaacaattcagaaacttatttgatggt-ttttaatataacgtaggga 3690820  T
Q  120 acgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcat---tcattcaacttcaacctcttttcat 213  Q
     | ||||||||  |||  |||||||| |  ||||||| ||||||||||||    ||||||||||| |||   | | ||| |||||||||||||||||    
T  3690819 tctatttgatagatagtgaaataattcagagactaatatgatggaaatattattacagaaaggttacatttctgaatcatcttcaacctcttttcat 3690723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 38550563 - 38550501
Alignment:
Q  42 tatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||||||||||| ||| || ||||  || ||||||| ||||||||||||||||||||    
T  38550563 tatgcaccaaggatcacagtgatatatgttgtaaaaattcaaggacttatttgatggtatttt 38550501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 45360146 - 45360230
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||||||| ||||||||||||||||    
T  45360146 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaaagacctatttgatggtatttt 45360230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 35692646 - 35692581
Alignment:
Q  39 atatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    ||||||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  35692646 atatatgcaccaaggatcacagtgatatctgttgtgaaaattcaatgacctatttgatggtatttt 35692581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 37792216 - 37792151
Alignment:
Q  154 aatttgatggaaatatatcaacagaaaggttgcattcattcaacttcaacctcttttcattacaac 219  Q
    |||||||||||||||| |  |||||| ||||| |||||||||    ||||||||||||||||||||    
T  37792216 aatttgatggaaatattttgacagaagggttgaattcattcattgacaacctcttttcattacaac 37792151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 2168019 - 2168163
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    |||||||||||| ||| || ||||||||||  |||||||||  |||| || || ||||| ||||||  |||||||||||| |  |||| |||||| |||     
T  2168019 acttttttacttaattttgtacatatatgcttcaaggatcaatttgatatctgattaaacaattcagggacttatttgataggtttttaatataacgtat 2168118  T
Q  117 ggaacgatttgatacttagccaaataatttaacgactaatttgat 161  Q
    ||| | ||||| ||  |||  |||||||| |  ||||||||||||    
T  2168119 ggatctatttggtagatagagaaataattcagggactaatttgat 2168163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 22154709 - 22154793
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| |||||||||||| |||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  22154709 tttttactttgtttagcaaatatatgcaccatggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 22154793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 22210624 - 22210708
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| |||||||||||| |||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  22210624 tttttactttgtttagcaaatatatgcaccatggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 22210708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 34776276 - 34776192
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||||||  ||||||||||||||||    
T  34776276 tttttactttgtttagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaagatctatttgatggtatttt 34776192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 38473439 - 38473355
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  38473439 tttttactttgtttagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 38473355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27076714 - 27076922
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||| ||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  27076714 caaattatgtctttttacttttttactttattctgcacatatttgcaccaaggatcacattgacatctgtttaaataattcaatgatttatttgatggta 27076813  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||||  |||||||||||| ||||||| |  |||||||||||||||||||||| ||||    
T  27076814 tttttatataatgtagggatcaatttgatacttgggcaaataatttagggactaatttgatagaaatattttgacagaaaggttgcattcattcatcttc 27076913  T
Q  201 aacctcttt 209  Q
    |||||||||    
T  27076914 aacctcttt 27076922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 24497618 - 24497745
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || |||||||||||||  ||||||||| ||||| || || ||||||||||||| || |||||||||||  |||| |||||||||||    
T  24497618 acttttttactttcttctgcacatatatgcttcaaggatcaaattgatatatgattaaataattcaatgatttatttgatgggtttttaatataatgtag 24497717  T
Q  117 ggaacgatttgatacttagccaaataat 144  Q
     || | |||||||| |||  ||||||||    
T  24497718 tgatcaatttgataattattcaaataat 24497745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19998073 - 19998143
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtt 71  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||    
T  19998073 caaattgtgtctctttacttttttactttattctgcacatatatgcactaagaatcacattgacatctgtt 19998143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 25509900 - 25509794
Alignment:
Q  36 cacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttag 135  Q
    ||||||||||   ||||||||| ||||| || |||||| |||||||||  |||||||||||||| |||| | |||||||||||| | |||||||  ||||    
T  25509900 cacatatatgtttcaaggatcaaattgatatctgtttatataattcaagaacttatttgatggttttttaacataatgtagggatcaatttgattgttag 25509801  T
Q  136 ccaaata 142  Q
     ||||||    
T  25509800 tcaaata 25509794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 32836703 - 32836556
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatata 170  Q
    ||||| ||||||  ||||||||||||| | |||| |||||| ||||||| | ||||||||  |||  |||||||| || |||||||||||||| |||||     
T  32836703 ttaaacaattcagggacttatttgatgattttttaatataacgtagggatctatttgatagatagagaaataattcaaggactaatttgatggtaatatt 32836604  T
Q  171 tcaacagaaaggttgcat---tcattcaacttcaacctcttttcatta 215  Q
       ||||||| ||| |||   ||| ||| |||||||||||||||||||    
T  32836603 attacagaaatgttacattcctcaatcatcttcaacctcttttcatta 32836556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 1344032 - 1343880
Alignment:
Q  68 tgtttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaat 167  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||| | ||   ||| ||||| |||| ||||||||| |  ||||||| |||||| ||     
T  1344032 tgtttatataattcaaagacttatttgatggtcttttaatataatgcaagggtggatctgatagttagacaaataattcagagactaatatgatggtaaa 1343933  T
Q  168 atatcaacagaaagg-ttgcattcattcaacttcaacctcttttcattacaac 219  Q
    ||    ||| ||||| ||   |||||||| ||||||||||||||| |||||||    
T  1343932 attattacataaaggctttatttcattcatcttcaacctcttttcgttacaac 1343880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 33257028 - 33257125
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||||||||||  |||||||||||| || ||||||||||| ||||| | | ||||||||  |||  ||||||||||  |||||||||||||| |||||    
T  33257028 ttaaataattcagggacttatttgatcgt-tttttatataacgtaggaatctatttgatagatagataaataatttagggactaatttgatggcaatat 33257125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 27349828 - 27349906
Alignment:
Q  143 atttaacgactaatttgatggaaatatatcaacagaaaggttgcattca--ttcaacttcaacctcttttcattacaac 219  Q
    |||||| ||||||||||||| |||||| |  ||||||||||| |||  |  |||| |||||||||||||||||||||||    
T  27349828 atttaaggactaatttgatgtaaatattttgacagaaaggttacatgaagattcatcttcaacctcttttcattacaac 27349906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 32089131 - 32089281
Alignment:
Q  18 cttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtagg 117  Q
    |||||||| |||||| || ||| |||||   |||||||||  |||| || || ||||| ||||||  ||||||||||||||| ||||||||||| | |||    
T  32089131 cttttttagtttattttgtacacatatgtttcaaggatcaatttgatatctgattaaacaattcatggacttatttgatggt-tttttatataacgcagg 32089229  T
Q  118 gaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    || | ||||||||  |||  ||||| || |  |||||||||||||| |||||    
T  32089230 gatctatttgatagatagagaaatagttcatggactaatttgatggcaatat 32089281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 30464952 - 30464870
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatt 102  Q
    |||||||||| ||  ||| ||||||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||    
T  30464952 tttttactttgttcagcaaatatatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatt 30464870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 38177447 - 38177349
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  || |||||| ||| | |||| |||||| ||||||| | ||||||||  |||  ||||||||||| |||||||||||||| |||||    
T  38177447 ttaaacaattcagggatttatttaatgattttttaatataacgtagggatctatttgatagatagagaaataatttaaggactaatttgatggtaatat 38177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 38204671 - 38204573
Alignment:
Q  71 ttaaataattcaaagacttatttgatggtatttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatat 169  Q
    ||||| ||||||  || |||||| ||| | |||| |||||| ||||||| | ||||||||  |||  ||||||||||| |||||||||||||| |||||    
T  38204671 ttaaacaattcagggatttatttaatgattttttaatataacgtagggatctatttgatagatagagaaataatttaaggactaatttgatggtaatat 38204573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 24431675 - 24431574
Alignment:
Q  16 tacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgta 115  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  24431675 tacttttttacttaattctgcacatatatgcaccaaggatcacgttgacatttgtttaaataattcaaggacttatttgatggtatttttatatagtgta 24431576  T
Q  116 gg 117  Q
    ||    
T  24431575 gg 24431574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17935260 - 17935471
Alignment:
Q  1 caaattgtgtctctatacttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggta 100  Q
    |||||||||||||| |||||||| ||||| || || ||||||||||| ||| ||||| ||||| || |||||| ||||||||| | ||||||| |||||     
T  17935260 caaattgtgtctctttacttttt-actttgttctgaacatatatgcatcaatgatcaaattgatatctgtttatataattcaagggcttattttatggtt 17935358  T
Q  101 tttttatataatgtagggaacgatttgatacttagccaaataatttaacgactaatttgatggaaatatatcaacagaaaggttgcattcattcaacttc 200  Q
    |||| |||||||||||| | |||||||||| |||  ||||||||| |  |||||||||| ||| |||||    || |||||||| |||||||||| ||||    
T  17935359 ttttcatataatgtaggaatcgatttgatatttacgcaaataattcatggactaatttgttggtaatattatgac-gaaaggttacattcattcatcttc 17935457  T
Q  201 aacctcttttcatt 214  Q
    ||||||||||||||    
T  17935458 aacctcttttcatt 17935471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 31209995 - 31210123
Alignment:
Q  17 acttttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttttatataatgtag 116  Q
    ||||||||||||| || | || ||||||||  | ||||||| ||||| || || ||||||||||||| |||||||||||||   |||| ||||||||||     
T  31209995 acttttttactttgttctacatatatatgcttcgaggatcaaattgatatctgattaaataattcaatgacttatttgatgactttttaatataatgtaa 31210094  T
Q  117 ggaacgatttgatacttagccaaataatt 145  Q
    ||| |||||||||| |||| |||||||||    
T  31210095 ggatcgatttgatagttagtcaaataatt 31210123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 10569211 - 10569293
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || |||| |||  |||||| ||||||||||||||||||||    
T  10569211 tttttactttgtttagcaaatgtatgcaccaaggatcacaatgatatatgttgaaa--attcaaggacttatttgatggtatttt 10569293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 7050568 - 7050652
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||||||||||||||||||||    
T  7050568 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatatgttgtgaaaattcaatgacttatttgatggtatttt 7050652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 18644082 - 18644166
Alignment:
Q  20 tttttactttattatgcacatatatgcaccaaggatcacattgacatttgtttaaataattcaaagacttatttgatggtatttt 104  Q
    |||||||||| ||  ||| || |||||||||||||||||| ||| || ||||   | ||||||| ||| ||||||||||||||||    
T  18644082 tttttactttgttcagcaaatgtatgcaccaaggatcacagtgatatctgttgtgaaaattcaaggacctatttgatggtatttt 18644166  T

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