View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_1 (Length: 778)
Name: NF19628_high_1
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_1 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 1 - 762
Target Start/End: Complemental strand, 44290867 - 44290104
Alignment:
| Q |
1 |
aaattcggtcaagaactacaaacctctgaacctcgccttccatggtaactgccaaacagtggctatcaccgcaagcaatttgctttatccttaatccttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290867 |
aaattcggtcaagaactacaaacctctgaacttcgccttccatggtaactgccaaacagtggctatcaccgcaagcaatttgctttatccttaatccttg |
44290768 |
T |
|
| Q |
101 |
taatgctctaataggctgaggaatgaacaaatcactagaattaccatgacccagccgtccaaagtcacccctgnnnnnnntcaaaataagatctacttga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44290767 |
taatgctctaataggctgaggaatgaacaaatcactagaattaccatgacccagccgtccaaagtcacccctgaaaaaaatcaaaataagatctacttga |
44290668 |
T |
|
| Q |
201 |
aaatttaagaatattgtcataatcataat--gtttcataacactattttcaatgtgaacaataatggatcagatattgaatggctcatgaaaacaacttg |
298 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290667 |
aaatttaagaatattgtcataatcataatatgtttcataacactattttcgatgtgaacaataatggatcagatattgaatggctcatgaaaacaacttg |
44290568 |
T |
|
| Q |
299 |
aaacgttatatgacccgaatagcaactcgatctgcgtaataagttttcgtacaatctaataaattatccagtctctttctgcccccaaaatcaaacttca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44290567 |
aaacgttatatgacccgaatagcaactcaatctgcgtaatgagttttcgtacaatctaataaattatccagtctctt-ctgcccccaaaatcaaacttca |
44290469 |
T |
|
| Q |
399 |
gttcatcttgagtatgaataaaggcaaattgctaactcaatctagatc-aatgaaccaacatttttacagatatccaagatataggtgcaagtataacaa |
497 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290468 |
gttcatcttgagtatgaataaaggcaaattgctaactcaatctagattgaatgaactgacatttttacagatatccaagatataggtgcaagtataacaa |
44290369 |
T |
|
| Q |
498 |
aaacactatcttaaagctaagtctaatacagcaacactacttcagaccatccataacccattctatataatgttatagcagtcaaaaagaaaaggacgca |
597 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290368 |
aaacactatcttaaagctaagtctaatacagcaacactacttcagaccatccataacccattctatataatgttatagcagtcaaaaagaaaaggacgca |
44290269 |
T |
|
| Q |
598 |
taccatccccaactatatacttccacttttgactctgaataagcaagggtatgatccgctccacaaacaacagatacaatttgttgagcgtccaatgcac |
697 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44290268 |
taccatccccaactatatacttccacttttgactctgaataagcaagggtatgatccgctccacaaacaacagatacaatttgttgagcatccaatgcac |
44290169 |
T |
|
| Q |
698 |
tgagttgagtaggcaaaagtctatcatcagtatcaccatgacctaattgtccatcctctcctcta |
762 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290168 |
tgagttgagtaggcaaaagtctatcatcagtatcaccatgacctaattgtccatcctctcctcta |
44290104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 19650 - 19785
Alignment:
| Q |
38 |
ttccatggtaactgccaaacagtggctatcaccgcaagcaatttgctttatccttaatccttgtaatgctctaataggctgaggaatgaacaaatcacta |
137 |
Q |
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||||||||||||||||||||| || | || || || | ||||||||||||||||| || |||||||||||||| || ||||||||||| || |||||| |
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| T |
19650 |
ttccatggtaactgccaaacaatgacagtccccacaggaaatttgctttatccttagaccctgtaatgctctaatgggatgaggaatgaataagtcacta |
19749 |
T |
|
| Q |
138 |
gaattaccatgacccagccgtccaaagtcacccctg |
173 |
Q |
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| T |
19750 |
ggatcaccatgacctaatcttccaaaatcacccctg |
19785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 38 - 173
Target Start/End: Complemental strand, 39412131 - 39411996
Alignment:
| Q |
38 |
ttccatggtaactgccaaacagtggctatcaccgcaagcaatttgctttatccttaatccttgtaatgctctaataggctgaggaatgaacaaatcacta |
137 |
Q |
| |
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||||||||||||||||||||| || | || || || | ||||||||||||||||| || |||||||||||||| || ||||||||||| || |||||| |
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| T |
39412131 |
ttccatggtaactgccaaacaatgacagtccccacaggaaatttgctttatccttagaccctgtaatgctctaatgggatgaggaatgaataagtcacta |
39412032 |
T |
|
| Q |
138 |
gaattaccatgacccagccgtccaaagtcacccctg |
173 |
Q |
| |
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| || ||||||||| | | |||||| ||||||||| |
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| T |
39412031 |
ggatcaccatgacctaatcttccaaaatcacccctg |
39411996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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