View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_10 (Length: 561)
Name: NF19628_high_10
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Complemental strand, 14072243 - 14071711
Alignment:
| Q |
14 |
gaagaaaaatgggttaacgatgtgtccgagtcgtctctaaggatattagaagtatgtggtatgtccaaagatgttcttttgtttgtaaaagaacatcttc |
113 |
Q |
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| T |
14072243 |
gaagaaaaatgggttaacgatgtgtccgagtcatctctaaggatattagaagtatgtggtatgtccaaagatgttcttttgtttgtaaaagaacatcttc |
14072144 |
T |
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| Q |
114 |
aagagcttcaatttacattgcgtagagcaagcattggtgagccaggaattgaggagaaaatcacttcacacaattgttatagaaaaaagttaaagaaaga |
213 |
Q |
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| T |
14072143 |
aagagcttcaatttacattgcgtagagcaagcattggtgagccaggaattgaggagaaaatcacttcacacaattgttatagaaaaaagttaaagaaaga |
14072044 |
T |
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| Q |
214 |
gactttgaagtgtttgaaatggttgaggggtgtgaaaagtaatatagtgactttgcaccctccaatgaaggaacaaaaactcaaattagttgttgatgtg |
313 |
Q |
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| T |
14072043 |
gactttgaagtgtttgaaatggttgaggggtgtgaaaagtaatatagtgactttgcaccctccaatgaaggaacaaaaactcaaattagttgttgatgtg |
14071944 |
T |
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| Q |
314 |
ttaagagaagtaaggatgacaagtatttcaattgtggaatcattgttgtcattgatttcaacaccatggttggattcaaaacatggtgggaaaaggtctt |
413 |
Q |
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| T |
14071943 |
ttaagagaagtaaggatgacaagtatttcaattgtggaatcattgttgtcattgatttcaacaccatggttggattcaaaacatggtgggaaaaggtctt |
14071844 |
T |
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| Q |
414 |
ttgcatcaaagtttttgcaaaattgtgatgatgatatctttgatgccatgatgcttcaaagtgcaaagaaaaggttaacgggggttcaaatagcaattga |
513 |
Q |
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| T |
14071843 |
ttgcatcaaagtttttgcaaaattgtgatgatgatatctttgatgccatgatgcttcaaagtgcaaagaaaaggttaacgggggttcaaatagcaattga |
14071744 |
T |
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| Q |
514 |
agatcttgaagttgagttggagtgtatgtttag |
546 |
Q |
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| T |
14071743 |
agatcttgaagttgagttggagtgtatgtttag |
14071711 |
T |
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