View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19628_high_11 (Length: 538)
Name: NF19628_high_11
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 221 - 524
Target Start/End: Original strand, 55402029 - 55402332
Alignment:
| Q |
221 |
atgtggatatggcgtaatcctttcaaataatttgtttggagaggaggtaccatattgatcgcaatgcacgtggatatgatgttggaataaaattcattat |
320 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
55402029 |
atgtggatctggcgtaatcctttcaaatcatttgtttggagaggaggtaccatattgatcgcaatgcatgtggatatgatgttgggatgaaattcattat |
55402128 |
T |
|
| Q |
321 |
ggagataggcctaacattaccaaccacatttttcttcggatttatcatttatggaccgaagccaaccgaacctaataagtgtccacccttatacgagtcc |
420 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
55402129 |
ggagataggcataacattaccaaccacatttttcttcggatttgtcatttctggaccgaagccgaccgaacctaataagtgtccacccttatacaagttc |
55402228 |
T |
|
| Q |
421 |
gacttcagaaagactcgcctcaaaactggagcttgtacaactagaaacactttcatctaataaaccagtcttttaaaattacctcttcattttatggtca |
520 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55402229 |
tacttcagaaagattcgcctcaaaactggagcttgtataactagaaacactttcatctaataaactagtcttttaaaattacctcttcattttatggtca |
55402328 |
T |
|
| Q |
521 |
caac |
524 |
Q |
| |
|
|||| |
|
|
| T |
55402329 |
caac |
55402332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 55400685 - 55400773
Alignment:
| Q |
9 |
acatcatcaagacattaatgctctggtcccatatcaaggcacataacatccaagtatattaattaaataatatttatgaatttttgttt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55400685 |
acatcatcaagacattaatgctctggtcccatatcaaggcacataacatccaagtatattaattaaataatatttatgaatttttgttt |
55400773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 55400771 - 55400858
Alignment:
| Q |
122 |
tttacatggtaatatataattgatacaaattgattcttacgttatatgccttattgtttattggttgttggaaagcatgaggaatatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55400771 |
tttacatggtaatatataattgatacaaattgattcttacgttatatgccttattgtttattggttgttggaaagcatgaggaatatt |
55400858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University