View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_12 (Length: 533)
Name: NF19628_high_12
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 514
Target Start/End: Complemental strand, 22482099 - 22481582
Alignment:
| Q |
9 |
ggtagattattctaacacgtttttacttacaataggttacataattataaatgcagtactattaaattaaattgaaaaatagtcacaaatgcactatact |
108 |
Q |
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| T |
22482099 |
ggtagattcttctaacacgtttttacttacaataggttacataattataaatgcagtactattaaattaaattgaaaaatagtcacaaatgcactatact |
22482000 |
T |
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| Q |
109 |
aaattatgaatgataatatatagtggagttataaaatttcactaacttcgggaatgatttagtttctattggcactgaacagacaaaatctaatttagga |
208 |
Q |
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| T |
22481999 |
aaattatgaatgataatatatagtggagttataaaatttcactaacttcgggaatgatttagtttctattggcactgaacagacaaaatctaatttagga |
22481900 |
T |
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| Q |
209 |
tttgggcgtgacaaaaccgtcagtgatcaagtttgaaaataatttgaatgtgactaaataatcaacgacaatgagct--------acatcattgtttgaa |
300 |
Q |
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| T |
22481899 |
tttgggcgtgacaaaaccgtcagtgatcaagtttgaaaataatttgaatgtgactaaataatcaacgacaatgagctacattgctacatcattgtttgaa |
22481800 |
T |
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| Q |
301 |
ttttttaaatggactaggattcggggtataaaaaattcaatagagaatctggttggtttgcctgtcactcttggaannnnnnnctctaagtaagaaaata |
400 |
Q |
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| T |
22481799 |
ttttttaaatggactaggattcggggtataaaaaattcaatagagaatctggttggtttgcctgtcactcttggaatttttttctctaagtatgaaaata |
22481700 |
T |
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| Q |
401 |
aaaaattgatgtagctgtataacattgaagactttgaat----tgaatgactcattttcctcttagttgagataaaattatagtatagttttgagaaatt |
496 |
Q |
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| T |
22481699 |
aataattgatgcagctgtataacattgaagactttgaattgaatgaatgactcattttcctcttagttgagataaaattatagtatagttttgagaaatt |
22481600 |
T |
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| Q |
497 |
gatatttgataagaatga |
514 |
Q |
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| T |
22481599 |
gatatttgataagaatga |
22481582 |
T |
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