View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_19 (Length: 472)
Name: NF19628_high_19
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 42954492 - 42954926
Alignment:
| Q |
19 |
gggaaatttataggctgcagaagttttcttttgacaaatgtttagaactaaagtgcgaaaaatagttgccattgttttggaattgtataaatcaattttc |
118 |
Q |
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| T |
42954492 |
gggaaatttataggctgcagaagttttcttttgacaaatgtttagaactaaagtgcgaaaaatagttgccattgttttggaattgtataaatcaattttc |
42954591 |
T |
|
| Q |
119 |
aggtgcaggtgcttctccagctaaatactgtttgtggaccattctcttgaaatctgcatgatatattccatgagtagcatcaattaaaatatgcattcga |
218 |
Q |
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| T |
42954592 |
aggtgcaggtgcttctccagctaaatactgtttgtggaccattctcttgaaatctgcatgatatattccatgagtagcatcaattaaaatatgcattcga |
42954691 |
T |
|
| Q |
219 |
caaatcataatgtgaatgaataatgaatagaaagaaagcaactataaccttagtttcttaaagatatgagaaatgaaaataacgatttcacatgatttcc |
318 |
Q |
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| T |
42954692 |
caaatcataatgtgaatgaataatgaatagaaagaaagcaactataaccttagtttcttaaagatatgagaaatgaaaataacgatttcacatgatttcc |
42954791 |
T |
|
| Q |
319 |
catcctaatatgttgaatagttagttgaaagaaaaaccaataacgattttcctccactctaaatagtaaatatatgtcatgacatgaagttggcaacaag |
418 |
Q |
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| T |
42954792 |
catcctaatatgttgaatagttagttgaaagaaaaaccaataacgattttcctccactctaaatagtaaatatatgtcatgacatgaagttggcaacaag |
42954891 |
T |
|
| Q |
419 |
aaatgaaaatatgagtgatgacttcatgagactga |
453 |
Q |
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| T |
42954892 |
aaatgaaaatatgagtgatgacttcatgagactga |
42954926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 42961960 - 42962167
Alignment:
| Q |
16 |
atggggaaatttataggctgcagaagttttcttttgacaaatgtttagaactaaagtgcgaaaaatagttgccattgttttggaatt-gtataaatcaat |
114 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||| |||||| |||| |||| ||||||||| ||||||||||| |
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| T |
42961960 |
atggggaaatttataggctgcagaaattttctttcgacaaatgtttacaacaaaagtgcggaaaataattgctattgctttggaatttgtataaatcaac |
42962059 |
T |
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| Q |
115 |
tttcaggtgcaggtgcttctccagctaaatactgtttgtggaccattctcttgaaatctgcatgatatattccatgagtagcatcaattaaaatatgcat |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
42962060 |
ttgcaggtgcaggtgcttctccagctaaatactgtttgtggaccattctcttgaaatctgcatgatatattccatgagtaccaccaattaaaatatgcat |
42962159 |
T |
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| Q |
215 |
tcgacaaa |
222 |
Q |
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|||||||| |
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| T |
42962160 |
tcgacaaa |
42962167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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