View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_20 (Length: 441)
Name: NF19628_high_20
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 174 - 429
Target Start/End: Original strand, 3946737 - 3946992
Alignment:
| Q |
174 |
taaaggcacgaattgagttattgacagatttctcaaactgacgatataagtaaacttttatgcactcaaaagcatagtaacatacctttcaatttctttc |
273 |
Q |
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| T |
3946737 |
taaaggcacgaattgagttattgacagatttctcaaactgacgatataagtaaacttttatgcactcgaaagcatagtaacatacctttcaatttctttc |
3946836 |
T |
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| Q |
274 |
gaaaaataaaaggttctctactcataaacgtgcttattcacaaggtacaaagaagttcgagctgaccaaaaatgaataatgttaatgactgagaaattca |
373 |
Q |
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| T |
3946837 |
gaaaaataaaaggttctctactcataaacgtgcttattcacaaggtacaaagaagttcgagctgaccaaaaatgaataatgttaatgactgagaaattca |
3946936 |
T |
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| Q |
374 |
agtcaaagtgtagagaattgtgtgtcaaaacataaacgtaatgccctcactatatt |
429 |
Q |
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| T |
3946937 |
agtcaaagtgtagagaattgtgtgtcaaaacataaacgtaatgccctcactatatt |
3946992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 3946504 - 3946662
Alignment:
| Q |
18 |
aaatattaaatatatagttaaaagtttgttaacatgtttctataaatagagttagttatccattttatcttcattttatttgagctcataagtataaata |
117 |
Q |
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| T |
3946504 |
aaatattaaatatatagttaaaattttgttaacatgtttctataaatagagttagttatccattttatcttcattttatttgagctcataagtataaata |
3946603 |
T |
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| Q |
118 |
gagtcacttgtattcatcattgatcaactgataaatttatcaataaataagatatttaa |
176 |
Q |
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| T |
3946604 |
gagtcacttgtattcatcattgatcaattgataaatttatcaataaataagatatttaa |
3946662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 37067961 - 37067900
Alignment:
| Q |
112 |
taaatagagtcacttgtattcatcattgatcaactgataaatttatcaataaataagatattt |
174 |
Q |
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||||||||||| ||||||||||| ||| ||||| |||| || |||||||||||| |||||||| |
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| T |
37067961 |
taaatagagtc-cttgtattcataattaatcaattgatcaagttatcaataaatgagatattt |
37067900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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