View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19628_high_23 (Length: 416)
Name: NF19628_high_23
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 49685092 - 49684699
Alignment:
| Q |
18 |
acacttgtgtatgtgagtttccgtagtatttatcttttcggattaaaaataaagtgccttagagaaaattagaagtatatctagaaacatagatcactaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49685092 |
acacttgtgtatgtgagtttccgtagtatttatcttttcggattaaaaataaagtgccttggagaaaattagaagtatatctagaaacatagatcactaa |
49684993 |
T |
|
| Q |
118 |
gctgactgaacaatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgcgttgtttttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
49684992 |
gctgactgaacaatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgcattgtttttc |
49684893 |
T |
|
| Q |
218 |
ttttcttattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684892 |
ttttcttattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaa |
49684793 |
T |
|
| Q |
318 |
accctaaagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctc---ttctcctctagggacgactttcctttgct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49684792 |
accctaaagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctcttcttctcctctagggacgactttcctttgct |
49684699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 49689578 - 49689482
Alignment:
| Q |
79 |
gagaaaattagaagtatatctagaaacatagatcactaagctgactgaacaa-tatatttaaccgaaaatgaaccgccaaataaccaacaagtactagca |
177 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||| | |||||||| |||||| | ||||||| ||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
49689578 |
gagaaaataagaagtgtat--agaaacatagatctcaaagctgacagaacaaatggatttaactgaaaa--aaccgccaaataatcaacaggtactagca |
49689483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University