View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_24 (Length: 413)
Name: NF19628_high_24
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 1664973 - 1664579
Alignment:
| Q |
1 |
agtctatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcaga |
100 |
Q |
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| T |
1664973 |
agtctatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcaga |
1664874 |
T |
|
| Q |
101 |
aaatatggacaaataaaatcacaataacaagtacttgacatagttgacaaaactgcaaaatttaactctaaaacatcaattttaattcaaacaaactctt |
200 |
Q |
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| T |
1664873 |
aaatatggacaaataaaatcacaataacaagtacttgacatagttgagaaaactgcaaaatttaactctaaaacatcaattttaattcaaacaaactctt |
1664774 |
T |
|
| Q |
201 |
caatcctttattatactttcatttcaagataagaactcaaacaaataggnnnnnnnccgacaaaataacgaataggaattagttacataaaattctataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1664773 |
caatcctttattatactttcatttcaagataagaactcaaacaaataggtttttttgcgacaaaataacgaataggagttagttacataaaattctataa |
1664674 |
T |
|
| Q |
301 |
gaatcacttgtctatatacaaatttgggaaacaacattaatgtttttgatgtctctgcgagtccgtgacaacaacacagccttcattgaggctgcatc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
1664673 |
gaatcacttgtctatatacaaatttgggaaacaacattaatgtttttgatgtctctgcgagtccg---cgacaacacagccttcattgaggctgcatc |
1664579 |
T |
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