View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_25 (Length: 397)
Name: NF19628_high_25
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 2834053 - 2834422
Alignment:
| Q |
1 |
tcctaaccatttgtttcattcattcagtgtcggtttctttttaattaaattgtttgattaaaaccaattaaatagttaagcatgagggtggcttagcgtg |
100 |
Q |
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| T |
2834053 |
tcctaaccatttgtttcattcattcagtgtcggtttctttttaattaaattgtttgattaaaaccaattaaatagttaagcatgagggtggcttagcgtg |
2834152 |
T |
|
| Q |
101 |
cgttttcaatcaaatcacggtttaatttaaacaaaaattgcaaaatacaagcttttgatccaattgtgcggagtttttaaaagtatatcaaaacatgctg |
200 |
Q |
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| T |
2834153 |
cgttttcaatcaaatcacggtttaatttaaacaaaaattgcaaaatacaagcttttgatccaattgtgcggagtttttaaaagtatatcaaaacatgctg |
2834252 |
T |
|
| Q |
201 |
tagaatatgtaagttaagttcgtgcttaaatttgaaaggatttcataaggtatagctccgtggttttaaattcgatctttgcatctgtttaggttgattt |
300 |
Q |
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| T |
2834253 |
tacaatatgtaagttaagttcgtgcttaaatttgaaaggatttcataaggtatagttccgtggttttaaa-tcgatctttgcatctgtttaggttgattt |
2834351 |
T |
|
| Q |
301 |
ggtggtgtaagtgtgccccttctgaatgttttagattcgatttttctatgtgtctatttaggtggataaat |
371 |
Q |
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||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2834352 |
ggtggtgtaagtgtgcctctcctgaatgttttaaattcgatttttctatgtgtctatttaggtggataaat |
2834422 |
T |
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