View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_high_39 (Length: 299)

Name: NF19628_high_39
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_high_39
NF19628_high_39
[»] chr1 (12 HSPs)
chr1 (13-269)||(48585553-48585809)
chr1 (13-266)||(48640129-48640382)
chr1 (206-267)||(48618046-48618107)
chr1 (206-267)||(48661780-48661841)
chr1 (204-266)||(48667376-48667438)
chr1 (206-263)||(48653352-48653409)
chr1 (16-133)||(48661896-48662013)
chr1 (208-267)||(11547459-11547518)
chr1 (13-132)||(48617853-48617972)
chr1 (206-267)||(48629094-48629155)
chr1 (16-132)||(48653483-48653599)
chr1 (13-133)||(11547593-11547713)
[»] chr3 (1 HSPs)
chr3 (13-132)||(19665209-19665328)
[»] chr8 (1 HSPs)
chr8 (13-65)||(25892561-25892613)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 48585809 - 48585553
Alignment:
Q  13 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48585809 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcg 48585710  T
Q  113 agttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585709 agttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctca 48585610  T
Q  213 aattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaatta 269  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585609 aatgatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaatta 48585553  T

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Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 48640382 - 48640129
Alignment:
Q  13 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48640382 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcg 48640283  T
Q  113 agttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctca 212  Q
    |||||||||| |||||||||||||| ||   | |||| ||||||||||||||||||||||  |||||||||||||||||||| |||| || |||||| ||    
T  48640282 agttctttgacgatggtttaccagatggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcaca 48640183  T
Q  213 aattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaa 266  Q
    ||| || ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  48640182 aatgataaagaatcatgccgattcaaacaaaccattttcatgtatcataaacaa 48640129  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 48618046 - 48618107
Alignment:
Q  206 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat 267  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48618046 tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaat 48618107  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 48661841 - 48661780
Alignment:
Q  206 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat 267  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  48661841 tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaat 48661780  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 48667438 - 48667376
Alignment:
Q  204 tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaa 266  Q
    |||||||||||| || ||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  48667438 tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaa 48667376  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 48653409 - 48653352
Alignment:
Q  206 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaa 263  Q
    |||||||||| ||||||||||||||||| | |||||||||| |||||||| |||||||    
T  48653409 tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaa 48653352  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 48662013 - 48661896
Alignment:
Q  16 ttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagt 115  Q
    ||||||||||||||||  ||||||||| ||||| ||  || | || ||||||   |||||||||||||||| || ||||||||| || ||  ||||||||    
T  48662013 ttcaccacaacagagaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcattttcgagt 48661914  T
Q  116 tctttgatgatggtttac 133  Q
    |||||||| || ||||||    
T  48661913 tctttgatcatagtttac 48661896  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 11547518 - 11547459
Alignment:
Q  208 tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat 267  Q
    |||||||| ||||||||||||| ||| | |||||||||| |||| |||||||||||||||    
T  11547518 tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaat 11547459  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 48617853 - 48617972
Alignment:
Q  13 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcg 112  Q
    ||||||| |||||||||||  ||||||||| ||||  || ||| |||||| |||||||| |||| |   ||| |||||||||||||| || |  |||| |    
T  48617853 atcttcatcacaacagagaaagctggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttg 48617952  T
Q  113 agttctttgatgatggttta 132  Q
    ||||||| ||||||||||||    
T  48617953 agttcttagatgatggttta 48617972  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 48629155 - 48629094
Alignment:
Q  206 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaat 267  Q
    ||||| |||| ||||||||||||||||||| ||  |||||| |||||||||||||| |||||    
T  48629155 tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaat 48629094  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 48653599 - 48653483
Alignment:
Q  16 ttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagt 115  Q
    |||| ||||||||| |  ||||| ||| ||||  || ||| ||||||||||||||| |||| |   |||||||||||||||||| |  || |||| ||||    
T  48653599 ttcatcacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagt 48653500  T
Q  116 tctttgatgatggttta 132  Q
    ||||||||||| |||||    
T  48653499 tctttgatgattgttta 48653483  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 11547713 - 11547593
Alignment:
Q  13 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcg 112  Q
    ||||||| ||||||| |||  ||||||||| |||| | | | | |||||||||| |||| |||| ||  ||  |||| ||| ||||| || || |||| |    
T  11547713 atcttcatcacaacaaagaaagctggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttg 11547614  T
Q  113 agttctttgatgatggtttac 133  Q
    |||||||||||||||||||||    
T  11547613 agttctttgatgatggtttac 11547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 19665209 - 19665328
Alignment:
Q  13 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcg 112  Q
    ||||||| ||| |||||||  ||||||||| |||||| | ||| ||||||||||| | |||||| |   |||||||| ||||||||| || ||  ||||     
T  19665209 atcttcatcactacagagaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttcc 19665308  T
Q  113 agttctttgatgatggttta 132  Q
    | ||||||||||||||||||    
T  19665309 acttctttgatgatggttta 19665328  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 25892561 - 25892613
Alignment:
Q  13 atcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 65  Q
    ||||||||||||||||| || || |||| ||||||||||  ||||||||||||    
T  25892561 atcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat 25892613  T

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