View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_41 (Length: 285)
Name: NF19628_high_41
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 33433445 - 33433207
Alignment:
| Q |
62 |
atgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaatt |
161 |
Q |
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| T |
33433445 |
atgccgccattcccgctagagacctcaaaattctcggtcatgtcttctctcattcctccaatatcctcgataattcaattttagggtttacaatttcaat |
33433346 |
T |
|
| Q |
162 |
cttgtttgtgaattaaggtttcatttttcctaatta-----------------tttatagcgtgagagaaagccatggtagtgaatttggagtttataaa |
244 |
Q |
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|| |||||||||||| | |||||| |||| |||||| || ||| || || |||||||||||||||||||||||||||||||||| |
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| T |
33433345 |
ctagtttgtgaattaggatttcatgtttcttaattaattctttatttattgtgttaataacgagaaagaaagccatggtagtgaatttggagtttataaa |
33433246 |
T |
|
| Q |
245 |
agcaattgttacagcaaaaaagattttgttacttgatcc |
283 |
Q |
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||||||||||||| ||| ||||||||||||||||||| |
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| T |
33433245 |
agcaattgttacattgaaagagattttgttacttgatcc |
33433207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 19252223 - 19251986
Alignment:
| Q |
62 |
atgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaattaatt |
161 |
Q |
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||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || | | |
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| T |
19252223 |
atgccgccattcccgctagagacctcaaaattctcggtcatgtcttctctcattcctccaatatcctcgataattcaattttagggtttacaatttcaat |
19252124 |
T |
|
| Q |
162 |
cttgtttgtgaattaaggtttcatttttcctaatta----------------tttatagcgtgagagaaagccatggtagtgaatttggagtttataaaa |
245 |
Q |
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|| |||||||||||| | |||||| ||| |||||| || ||| || || | ||||||||||||||||||||||||||||||||| |
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| T |
19252123 |
ctagtttgtgaattaggatttcatgtttattaattaattctttattattgtgttaataacgagaaataaagccatggtagtgaatttggagtttataaaa |
19252024 |
T |
|
| Q |
246 |
gcaattgttacagcaaaaaagattttgttacttgatcc |
283 |
Q |
| |
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|||| ||||||| ||| ||||||||||||||||||| |
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| T |
19252023 |
gcaactgttacattgaaagagattttgttacttgatcc |
19251986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 283
Target Start/End: Complemental strand, 36826471 - 36826229
Alignment:
| Q |
57 |
ccgctatgccgctattcccgctagagacttcagaattctcggtcatgtcttctctcattcctccaatatcctctgtaattcaaatttagggtttacaaat |
156 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||| | |
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| T |
36826471 |
ccgccatgccgctattcccgctagagacctcagaattcttggccctgtcttctctcattcctccaatatcctcggtaattcaattttagggcttacaatt |
36826372 |
T |
|
| Q |
157 |
taattcttgtttgtgaattaaggtttcatttttcctaatta-----------------tttatagcgtgagagaaagccatggtagtgaatttggagttt |
239 |
Q |
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| | | | |||| ||||||| |||||| | |||| |||||| ||||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
36826371 |
tcaat-tagtttatgaattagggtttcttgtttcttaattatttatttatttattgtgtttatagcgagagagaaagcaatggttgtgaatttggagttt |
36826273 |
T |
|
| Q |
240 |
ataaaagcaattgttacagcaaaaaagattttgttacttgatcc |
283 |
Q |
| |
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|||||||||||||||||||| || ||||||| || |||||||| |
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|
| T |
36826272 |
ataaaagcaattgttacagctgaagagattttattgcttgatcc |
36826229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 25442213 - 25442173
Alignment:
| Q |
157 |
taattcttgtttgtgaattaaggtttcatttttcctaatta |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
25442213 |
taattcttgtttgtgaattaaggtttcatttttcctaatta |
25442173 |
T |
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