View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_47 (Length: 261)
Name: NF19628_high_47
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 34194163 - 34194399
Alignment:
| Q |
9 |
acatcatcagaatattaaatggaataaaaatattagcagtttaatacctaattctgaagctgcaactcttatgtaaaggtcttgtcctccagagggtaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194163 |
acatcatcagaatattaaatggaataaaaatattagcagtttaatacctaattctgaagctgcaactcttatgtaaaggtcttgtcctccagagggtaat |
34194262 |
T |
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| Q |
109 |
tttctgacatccaaaatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194263 |
tttctgacatccaaaatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatac |
34194362 |
T |
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| Q |
209 |
agaatcgctcacattcttcgaggttcatgctcttatt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34194363 |
agaatcgctcacattcttcgaggttcatgctcttatt |
34194399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 34217360 - 34217177
Alignment:
| Q |
62 |
ctgaagctgcaactcttatgtaaaggtcttgtcctccagagggtaattttctgacatccaaaatgttattaaaccaaagcaagcagccacttccaccatc |
161 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217360 |
ctgaatctgcaactcttatgtaaaggtcttgccctccagagggtaattttctgacatccaaaatgttattaaaccaaagcaagcagccacttccaccatc |
34217261 |
T |
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| Q |
162 |
tctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgaggttcatgctcttatt |
245 |
Q |
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| T |
34217260 |
tctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgaggttcatgctcttatt |
34217177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 54 - 245
Target Start/End: Complemental strand, 34205943 - 34205752
Alignment:
| Q |
54 |
acctaattctgaagctgcaactcttatgtaaaggtcttgtcctccagagggtaattttctgacatccaaaatgttattaaaccaaagcaagcagccactt |
153 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||| | |||||||||||||||||| | ||| |||||| |
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| T |
34205943 |
acctagttctgaagctgcaactcttatgtaaaggtcttgtcctccagcacgtagttttttggcatcaagaatgttattaaaccaaagtatgcaaccactt |
34205844 |
T |
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| Q |
154 |
ccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgaggttcatgctcttatt |
245 |
Q |
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| T |
34205843 |
ccaccatctctgacatctaaacttgcatatgctgtgcaattacagtttcctagacaggatttctcacattcttcaaggctcatactcttatt |
34205752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 5525872 - 5525951
Alignment:
| Q |
118 |
tccaaaatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaaca |
197 |
Q |
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| T |
5525872 |
tccacaatgttgttaaaccaaagtaagcagccactcccaccatctctgacatctgaatttgcatatgcagtgcaagaaca |
5525951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 5848934 - 5848851
Alignment:
| Q |
118 |
tccaaaatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
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| T |
5848934 |
tccacaatgttgttaaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagtacagttt |
5848851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 5484842 - 5484911
Alignment:
| Q |
132 |
aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
| |
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| T |
5484842 |
aaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagaacagttt |
5484911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 5503040 - 5503118
Alignment:
| Q |
123 |
aatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
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| T |
5503040 |
aatgttgtcaaaccaaagtaagcagccactcccaccatctctgatatctgaatttgcatatgcagtgcaagaacagttt |
5503118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 5854230 - 5854152
Alignment:
| Q |
123 |
aatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
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| T |
5854230 |
aatgttgtcaaaccaaagtaagcagccacttccaacatatctgatatctaaatttgcatatgcagtgcaagaacagttt |
5854152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 5802525 - 5802454
Alignment:
| Q |
130 |
ttaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
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||||||||||| ||||||||||| |||||||| |||| |||| ||||||||||||| || |||||||||||| |
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| T |
5802525 |
ttaaaccaaagtaagcagccactaccaccatccctgatatctgaatttgcatatgcggtgcaagaacagttt |
5802454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 5490222 - 5490305
Alignment:
| Q |
118 |
tccaaaatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
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| T |
5490222 |
tccacaatgttgttaaaccaaagtatgcagccactcccaccatctttgatatctgaatttgcatatgcagtgcaagtacagttt |
5490305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 5828193 - 5828122
Alignment:
| Q |
130 |
ttaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagttt |
201 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||| | |||||||||||| |
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| T |
5828193 |
ttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagttt |
5828122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 20343665 - 20343732
Alignment:
| Q |
118 |
tccaaaatgttattaaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgc |
185 |
Q |
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|||||||| || | ||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
20343665 |
tccaaaatattgtcaaaccaaagtaagcaaccactcccaccatctctgatatctaaatttgcatatgc |
20343732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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