View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_54 (Length: 229)
Name: NF19628_high_54
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 12665181 - 12664979
Alignment:
| Q |
13 |
attatacttgataccatagaactctgctggtagacagttggagcaagtctagcccttaaatcccttcataaggcttagggaaatcttgatacaaattaat |
112 |
Q |
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| T |
12665181 |
attatacttgataccatagaactctactggtagacagttggagcaagtctagcccttaaatcccttcataaggcttagggaaatcttgatacaaattaat |
12665082 |
T |
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| Q |
113 |
gagatcgaaagagtttcctagctatagaacattgataaaattaggaaagattgaacttgaaagatgattaattgaaatatgtaactttatacaaacaata |
212 |
Q |
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| T |
12665081 |
gagatctaaagagtttcctagctatagaacattgataaaattaggaaagattgaacttgaaagatgattaattgaaatatgtaactttatacaaacaata |
12664982 |
T |
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| Q |
213 |
aat |
215 |
Q |
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||| |
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| T |
12664981 |
aat |
12664979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 12648805 - 12648756
Alignment:
| Q |
100 |
gatacaaattaatgagatcgaaagagtttcctagctatagaacattgata |
149 |
Q |
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| T |
12648805 |
gatacaaatttacgagatctaaagagtttcctagctatagaacattgata |
12648756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 7893773 - 7893817
Alignment:
| Q |
155 |
aggaaagattgaacttgaaagatgattaattgaaatatgtaacttt |
200 |
Q |
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| T |
7893773 |
aggaaaaattgaacttgcaagatgattaattgaaat-tgtaacttt |
7893817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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