View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_high_55 (Length: 223)
Name: NF19628_high_55
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 43437523 - 43437330
Alignment:
| Q |
20 |
ccatgagaggctctcaacgccatcacccgtagttagtggggggaagcacgtcaagattcttccaaattcgtctgatgttaatcaatttcgtatttttcta |
119 |
Q |
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| T |
43437523 |
ccatgagaggctctcaacgccatcacccgtagttggtggggggaagcacgtcaagattcttccaaattcgtctgatgttaatcaatttcgtatttttcta |
43437424 |
T |
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| Q |
120 |
ctccttcttactatgctcattttcatttcttatgtagctgtttttctttctttagttgtacgattgtgatttgagatgcttggttatattcttc |
213 |
Q |
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| T |
43437423 |
ccccttcttactatgctcattttcatttcttatgtagctgtttttctttctttagttgtatgattgtaatttgagatgcttggttatattcttc |
43437330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 13827907 - 13827717
Alignment:
| Q |
23 |
tgagaggctctcaacgccatcacccgtagttagtggggggaagcacgtcaagattcttccaaattcgtctgatgttaatcaatttcgtatttttctactc |
122 |
Q |
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|||||||||||||| | |||||||||||| | |||||||||||| ||| | | ||||||| ||||||||||||||||||||| |||||| ||||||| | |
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| T |
13827907 |
tgagaggctctcaatgtcatcacccgtagctggtggggggaagcgtgtccatagtcttccatattcgtctgatgttaatcaatctcgtatctttctaccc |
13827808 |
T |
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| Q |
123 |
cttcttactatgctcattttcatttcttatg-tagctgtttttctttctttagttgtacgattgtgatttgagatgcttggttatattctt |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
13827807 |
cttcttactatgctcattttcatttcttatgatagctgtttttctttctttagctgtatgattgtgatttgagatgtttggttatattctt |
13827717 |
T |
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