View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_high_7 (Length: 646)

Name: NF19628_high_7
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_high_7
NF19628_high_7
[»] chr8 (12 HSPs)
chr8 (24-629)||(32166281-32166890)
chr8 (87-315)||(33897618-33897847)
chr8 (95-307)||(35574613-35574827)
chr8 (225-320)||(12736074-12736169)
chr8 (237-294)||(29969129-29969186)
chr8 (94-182)||(29969153-29969241)
chr8 (216-307)||(6630512-6630603)
chr8 (130-180)||(6803876-6803926)
chr8 (226-295)||(31475059-31475128)
chr8 (89-180)||(6630316-6630406)
chr8 (241-294)||(7405544-7405597)
chr8 (250-294)||(29093581-29093625)
[»] chr7 (18 HSPs)
chr7 (87-361)||(34891414-34891690)
chr7 (95-323)||(42012690-42012918)
chr7 (95-286)||(31171287-31171480)
chr7 (87-275)||(3191572-3191760)
chr7 (95-286)||(31152725-31152919)
chr7 (205-278)||(32138888-32138961)
chr7 (216-320)||(32962351-32962455)
chr7 (225-275)||(23944096-23944146)
chr7 (220-275)||(34891380-34891435)
chr7 (228-294)||(8354378-8354444)
chr7 (133-252)||(22593597-22593722)
chr7 (102-260)||(8900670-8900831)
chr7 (227-352)||(33362340-33362465)
chr7 (89-180)||(33362347-33362436)
chr7 (221-259)||(7463864-7463902)
chr7 (240-286)||(44755106-44755152)
chr7 (205-241)||(27651379-27651415)
chr7 (205-257)||(29152350-29152402)
[»] chr5 (23 HSPs)
chr5 (94-321)||(7113573-7113804)
chr5 (205-320)||(973111-973226)
chr5 (208-320)||(14138548-14138660)
chr5 (96-294)||(40483739-40483939)
chr5 (94-182)||(2243249-2243335)
chr5 (208-275)||(2243321-2243388)
chr5 (81-182)||(17739908-17740009)
chr5 (225-301)||(22780323-22780399)
chr5 (221-259)||(972845-972883)
chr5 (226-300)||(7215448-7215522)
chr5 (224-294)||(41264392-41264462)
chr5 (205-254)||(7215322-7215371)
chr5 (226-307)||(40483703-40483783)
chr5 (81-181)||(7215230-7215329)
chr5 (216-260)||(37077663-37077707)
chr5 (76-191)||(39730369-39730484)
chr5 (221-273)||(39808239-39808291)
chr5 (216-307)||(7982353-7982444)
chr5 (250-320)||(7982214-7982284)
chr5 (205-275)||(17736759-17736829)
chr5 (205-315)||(37077760-37077870)
chr5 (246-307)||(17739907-17739968)
chr5 (225-274)||(39730312-39730361)
[»] chr3 (9 HSPs)
chr3 (119-361)||(39341110-39341356)
chr3 (122-275)||(42091796-42091951)
chr3 (219-307)||(54437651-54437739)
chr3 (206-275)||(46303371-46303440)
chr3 (205-287)||(34761946-34762028)
chr3 (81-182)||(54437848-54437949)
chr3 (204-261)||(31758242-31758298)
chr3 (205-259)||(54437806-54437860)
chr3 (216-273)||(48646423-48646479)
[»] chr2 (19 HSPs)
chr2 (87-287)||(13712743-13712945)
chr2 (95-307)||(9050098-9050313)
chr2 (205-321)||(16576248-16576364)
chr2 (227-339)||(2909844-2909956)
chr2 (208-307)||(16863459-16863558)
chr2 (209-321)||(34176708-34176820)
chr2 (95-257)||(38576791-38576955)
chr2 (81-320)||(16576290-16576532)
chr2 (127-184)||(38576707-38576764)
chr2 (216-293)||(38576924-38577001)
chr2 (95-165)||(9931337-9931406)
chr2 (209-278)||(35370402-35370471)
chr2 (95-179)||(25606423-25606506)
chr2 (89-309)||(34176755-34176979)
chr2 (205-284)||(28282824-28282903)
chr2 (216-259)||(34176654-34176697)
chr2 (205-294)||(25606366-25606455)
chr2 (87-180)||(28282699-28282791)
chr2 (205-309)||(35371111-35371215)
[»] chr4 (13 HSPs)
chr4 (87-263)||(25234217-25234393)
chr4 (81-278)||(25062361-25062563)
chr4 (160-275)||(15131580-15131698)
chr4 (204-320)||(22050851-22050967)
chr4 (131-345)||(53999981-54000199)
chr4 (216-307)||(20512800-20512891)
chr4 (216-302)||(11020059-11020144)
chr4 (211-274)||(4115389-4115452)
chr4 (226-287)||(25062340-25062401)
chr4 (87-180)||(55897600-55897693)
chr4 (221-263)||(54000233-54000275)
chr4 (89-182)||(22050903-22050995)
chr4 (226-286)||(46431144-46431204)
[»] chr1 (24 HSPs)
chr1 (205-286)||(10775163-10775244)
chr1 (205-278)||(46080971-46081044)
chr1 (237-307)||(7104297-7104367)
chr1 (158-275)||(7997194-7997314)
chr1 (205-275)||(34601446-34601516)
chr1 (208-322)||(52432836-52432950)
chr1 (250-306)||(7104215-7104271)
chr1 (229-320)||(3367806-3367897)
chr1 (168-257)||(44342055-44342145)
chr1 (89-182)||(3232179-3232271)
chr1 (89-174)||(7104316-7104400)
chr1 (205-288)||(12144970-12145050)
chr1 (224-301)||(15321060-15321137)
chr1 (205-258)||(42819621-42819674)
chr1 (216-272)||(52432672-52432728)
chr1 (208-345)||(34601544-34601681)
chr1 (78-167)||(49897909-49897998)
chr1 (94-167)||(67982-68054)
chr1 (205-294)||(68097-68186)
chr1 (81-140)||(68139-68198)
chr1 (226-294)||(3231979-3232047)
chr1 (205-275)||(49897870-49897940)
chr1 (226-275)||(38839666-38839715)
chr1 (216-284)||(10775028-10775096)
[»] chr6 (11 HSPs)
chr6 (123-320)||(20068000-20068200)
chr6 (205-274)||(32342600-32342669)
chr6 (174-306)||(23577118-23577252)
chr6 (225-322)||(32047194-32047291)
chr6 (208-254)||(20206481-20206527)
chr6 (208-254)||(22100504-22100550)
chr6 (206-290)||(23577009-23577093)
chr6 (127-182)||(32047262-32047317)
chr6 (247-301)||(7716732-7716786)
chr6 (98-152)||(23577068-23577121)
chr6 (133-179)||(26236751-26236797)
[»] scaffold0136 (1 HSPs)
scaffold0136 (221-307)||(36946-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (216-275)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (216-263)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 24 - 629
Target Start/End: Complemental strand, 32166890 - 32166281
Alignment:
Q  24 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaacttcttatcttcttcatttaacatgtgatttacatctcttt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32166890 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaatttcttatcttcttcatttaacatgtgatttacatctcttt 32166791  T
Q  124 tcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatagtttttcttactatcaatta 223  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32166790 -cgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgctcatcgatagtttttcttactatcaatta 32166692  T
Q  224 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaa 323  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  32166691 tcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatcttttttatcattagaa 32166592  T
Q  324 caaattacccctaatttatcaaaggataacatagaccttaccaa------tatgttgatgtgggaaccacatacatattgaaagtgtgtttagagagcat 417  Q
    |||||||||||||||| ||||||||||||||||| |||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166591 caaattacccctaattcatcaaaggataacataggccttaccaatgaatgtatgttgatgtgggaaccacatacatattgaaagtgtgtttagagagcat 32166492  T
Q  418 ttatgattaggatatgacattactaacattagctaagtgataaggaagtcaatgattcaattttcattcttggcaataagattaaaaacattcattctnn 517  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||      
T  32166491 ttatgattaggatatggcattactaacattagctaagtgataaggaagtcaatgattcaattttcactcttggcaataagattaaaaacattcattct-a 32166393  T
Q  518 nnnnnnnctagtaccgtagaaaaacattaaagaatcacgattttcccgactttattatattatcaaaaagtgcaacttgcatcttctttgcttttaagtt 617  Q
           ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  32166392 aaaaaaactagtaccgtataaaagcattaaagaatcacgattttcccgactttattatattatcaaaacacgcaacttgcatcttctttgcttttaagtt 32166293  T
Q  618 taaccttatttc 629  Q
    ||||| ||||||    
T  32166292 taaccctatttc 32166281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 87 - 315
Target Start/End: Original strand, 33897618 - 33897847
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 186  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||  || |||| ||| ||||||||| | ||||| |||||||||||    
T  33897618 ttatctccttcatttaacatgtgatttacatct-ttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaa 33897716  T
Q  187 atgtatgctcatcgatag-tttttctt-actatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 284  Q
    ||||| |||| ||||||  |||||||| |||||||||||  |||||||||| || ||||||||| ||||| || ||||| |||||||||||||  | |||    
T  33897717 atgtaggctcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccat 33897816  T
Q  285 ctctttcgtttcagaattgaatcttttttat 315  Q
     | |||||||||| ||| ||||||| |||||    
T  33897817 ttatttcgtttcaaaatcgaatcttatttat 33897847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 95 - 307
Target Start/End: Complemental strand, 35574827 - 35574613
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgta-tg 193  Q
    |||||| ||||| ||||||  |||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||| |||| |       
T  35574827 ttcattgaacatatgattttaatctcttt-cgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagac 35574729  T
Q  194 ctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttc 291  Q
    ||||| ||||  ||||||||||| || | |||  ||||||||||||||||||||||| || |||||||| || ||||||||||| || | ||||| ||||    
T  35574728 ctcattgatagggtttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttc 35574629  T
Q  292 gtttcagaattgaatc 307  Q
    ||| || ||| |||||    
T  35574628 gttccaaaatcgaatc 35574613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 12736074 - 12736169
Alignment:
Q  225 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 320  Q
    ||||| |||||||| ||||||||||||||||||||||||  |||||||||| |||| |||||| ||  ||| |||||  ||| || ||||||||||    
T  12736074 catttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctccttttttttagaatcaaatgttatttatcatta 12736169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 29969129 - 29969186
Alignment:
Q  237 aagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    ||||||||||||||||||| || |||| ||||||||||| || |||||||||||||||    
T  29969129 aagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgtt 29969186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 29969153 - 29969241
Alignment:
Q  94 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcatt-agaggtaaattacccccaattcatcaagg 182  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||  ||||||||||| || ||||||||| || |||||||||||||    
T  29969153 cttcattcaacatgtgatattcatctcttt-cgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaagg 29969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 6630603 - 6630512
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |||| || || | |||||| ||||||  | |||||||||    
T  6630603 atcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcattcgttctataattgaatc 6630512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 6803926 - 6803876
Alignment:
Q  130 caaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 180  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  6803926 caaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 31475059 - 31475128
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgttt 295  Q
    ||||| |||| ||||||||||||||||||||||| ||| |||||  |||| || ||||||||||| ||||    
T  31475059 atttttatctcaagaacatcaaacttcttcatcttcttgattcacaatgtgattttcatctcttttgttt 31475128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 6630406 - 6630316
Alignment:
Q  89 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 180  Q
    ||||| |||||| |||||||| | | |||||| || | || ||||||| |||| ||||||||||||| |||||||||| | |||||||||||    
T  6630406 atctttttcattcaacatgtgttatccatctcctt-catttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 7405597 - 7405544
Alignment:
Q  241 acatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    ||||||||| ||||||||||||  ||||||||||| || |||||||| ||||||    
T  7405597 acatcaaacgtcttcatctcctacattcaacatgtgatcttcatctcgttcgtt 7405544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 29093581 - 29093625
Alignment:
Q  250 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    |||||||||||||| ||||||||||| || | |||||||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgtt 29093625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 87 - 361
Target Start/End: Original strand, 34891414 - 34891690
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 186  Q
    ||||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||| ||||||| || ||||||||||||| | |||||||||||| |    
T  34891414 ttatcttcttcatttaacatgtgatctagatctcttt-cattcccaaatcgaattgtatttgtcatgaggggtaaattacccc-agttcatcaaggaaga 34891511  T
Q  187 atgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttca 283  Q
    || || ||||| |||||    ||||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| ||||||||||| || | ||    
T  34891512 atataggctcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctcca 34891611  T
Q  284 tctctttcgtttcagaattgaatcttttttatcatt-agaacaaattacccctaatttatcaaaggataacatagacct 361  Q
    | |  ||||||  | ||||||||||| ||| | ||| | |  ||||||||||||||| || ||||| ||||||||||||    
T  34891612 tttgcttcgttataaaattgaatcttatttgttattgatagtaaattacccctaattcattaaagggtaacatagacct 34891690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 95 - 323
Target Start/End: Original strand, 42012690 - 42012918
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 194  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| || | ||||||| |||||||| |||||||||||||||| |     
T  42012690 ttcatttaagatgtgatttacatct-ttttcgttccaaaatcgaatcatatatgtcatgagggataaatta-ccccaattaatcaaggaaaaatgtaagt 42012787  T
Q  195 tcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttc 291  Q
    ||||| |||    |||||||||  |||| ||| || ||| |||  ||||||||||||||| |||||||  |||||||||||||| || | ||| |  |||    
T  42012788 tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct-atttattcaacatgtgatctccatttacttc 42012886  T
Q  292 gtttcagaattgaatcttttttatcattagaa 323  Q
    |||  |||||| |||||| |||||||||||||    
T  42012887 gttcaagaattaaatcttatttatcattagaa 42012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 31171480 - 31171287
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 194  Q
    |||||| || ||||||||| ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31171480 ttcattcaaaatgtgatttccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31171382  T
Q  195 -tcatc--gatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 286  Q
     |||||    | ||||||||||| | |||||| |||||||||||||| |||||||| ||||||||| || ||  |||||||| |||| |||||||    
T  31171381 ttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcgttcaacatctaattttcatct 31171287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 3191760 - 3191572
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 186  Q
    |||||| |||||||||| |||||||||||||| |||| | || |||||| |||||||| ||| ||| |  ||||||||||| ||||| |||  |||||||    
T  3191760 ttatctccttcatttaagatgtgatttacatcccttt-catttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaa 3191662  T
Q  187 atgtatgctcatcgatagtttt-tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||  ||||   ||  |||| | ||||||||| ||||  ||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  3191661 atgtagactcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgt 3191572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 31152919 - 31152725
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 194  Q
    |||||| || ||||||| | ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31152919 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  195 -tcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 286  Q
     |||||  |     |||||| ||| | |||||| |||||||||||||| |||||||| ||||||||| || || ||||||||| |||| |||||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacatctaattttcatct 31152725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 32138961 - 32138888
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 278  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaat 32138888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 32962455 - 32962351
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttat 315  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||| | || | ||| | ||| |||||| ||| ||||| | |||||    
T  32962455 atcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttat 32962356  T
Q  316 catta 320  Q
    |||||    
T  32962355 catta 32962351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 23944096 - 23944146
Alignment:
Q  225 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgt 23944146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 34891380 - 34891435
Alignment:
Q  220 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||    
T  34891380 attatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgt 34891435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 8354444 - 8354378
Alignment:
Q  228 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    |||||||| |||||||| |||||||| ||| ||||| ||||||||||| || ||||| |||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgatattcatatctttcgtt 8354378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 22593722 - 22593597
Alignment:
Q  133 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag-----tttttctt-actatcaattatc 225  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |   |||||| | ||||||||||      |||||||| || ||||||| ||    
T  22593722 aatcgaatcgtaattgtcattag-ggtaaattacctccaattcattaatgggtaatgtaggtctcatcgataagattttttttctttacaatcaattgtc 22593624  T
Q  226 attttcatcttaagaacatcaaacttc 252  Q
    |||||||||| ||||||||||||||||    
T  22593623 attttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 8900831 - 8900670
Alignment:
Q  102 aacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgct----ca 197  Q
    |||||||||| ||||| | |||| ||| || ||||||||  ||||||| ||||| | ||||||||||| |||||||||| | | |||||| |||    ||    
T  8900831 aacatgtgatctacatttttttttgtttcataatcgaattctacttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaaca 8900733  T
Q  198 tcgatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctc 260  Q
    |   |  |||||||||| || ||||| |||||| |||| ||||||| ||||||||||||||||    
T  8900732 tttttgttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 352
Target Start/End: Complemental strand, 33362465 - 33362340
Alignment:
Q  227 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaacaa 326  Q
    ||||||| || |||||||||||||| || |||||||| ||||||||||| || | || |||||| |||  | ||| ||||| | |||| |||||||  ||    
T  33362465 ttttcattttcagaacatcaaactttttaatctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatatttaccattagagtaa 33362366  T
Q  327 attacccctaatttatcaaaggataa 352  Q
     |||||||||| | |||||| |||||    
T  33362365 cttacccctaactcatcaaatgataa 33362340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 33362436 - 33362347
Alignment:
Q  89 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 180  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||| || ||  ||||||| |||| ||||||| || |||||||    
T  33362436 atctccttcattcaacatgtgatttacaactctttt-gttctaaaatcgaatcatatttaccattaga-gtaacttacccctaactcatcaa 33362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 7463864 - 7463902
Alignment:
Q  221 ttatcattttcatcttaagaacatcaaacttcttcatct 259  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  7463864 ttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 44755106 - 44755152
Alignment:
Q  240 aacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 286  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||||    
T  44755106 aacatcaaacttcttcatatcatttgttcaacatgtaatcttcatct 44755152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 27651415 - 27651379
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaa 241  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27651415 tttttcttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 257  Q
    |||||||||| |||| |||  |||||||||| || ||||||||||||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 94 - 321
Target Start/End: Complemental strand, 7113804 - 7113573
Alignment:
Q  94 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccc-caattcatcaaggaaaaatgtat 192  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||     
T  7113804 cttcatttaagatgtgatttacatctctttt-gttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T
Q  193 gctcatcg--atag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctct 288  Q
    | || |||  ||||  ||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| || ||||||| ||| || ||||| |      
T  7113705 gttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcatttac 7113606  T
Q  289 ttcgtttcagaattgaatcttttttatcattag 321  Q
     ||||| || |||| |||||| |||||||||||    
T  7113605 atcgttccaaaattaaatcttatttatcattag 7113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 973111 - 973226
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 304  Q
    |||||||||| || | |||||||||| |||| || ||||| ||| |||||||||||||||||||||||||| || |||||||| ||| || || ||||||    
T  973111 tttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattga 973210  T
Q  305 atcttttttatcatta 320  Q
    ||| | ||||||||||    
T  973211 atcatatttatcatta 973226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 14138548 - 14138660
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||  ||||||| || |||||||||||||| ||||||| ||| |||| | ||| ||||     
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaatt 14138647  T
Q  308 ttttttatcatta 320  Q
     | ||||||||||    
T  14138648 atatttatcatta 14138660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 294
Target Start/End: Original strand, 40483739 - 40483939
Alignment:
Q  96 tcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-c 194  Q
    ||||| |||||||||| | |||||| || ||||||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||  | ||  || | |    
T  40483739 tcattcaacatgtgatcttcatctcatt-cgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcc 40483837  T
Q  195 tcatcgatag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcg 292  Q
    ||||||||||  |||||| ||| |||||||  ||  || || | ||||||||| ||||||||||||| ||||| ||||||||| || | |||||| ||||    
T  40483838 tcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatctcattcg 40483937  T
Q  293 tt 294  Q
    ||    
T  40483938 tt 40483939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 2243335 - 2243249
Alignment:
Q  94 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 182  Q
    ||||||| |||||||||| | ||||| | ||||||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  2243335 cttcattcaacatgtgatctccatct-tcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaagg 2243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 2243388 - 2243321
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgt 2243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 17739908 - 17740009
Alignment:
Q  81 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 179  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||| | ||||| | | |||| | | ||||||||||    
T  17739908 aacttcttcatcttcttcatttaacatgtgattttcatctc-cttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  180 agg 182  Q
    |||    
T  17740007 agg 17740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 22780399 - 22780323
Alignment:
Q  225 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 301  Q
    ||||||||||| || ||||  |||||||||||| ||||| ||||||||||| || |||||| ||||||||| |||||    
T  22780399 cattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatccctttcgttttagaat 22780323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 972845 - 972883
Alignment:
Q  221 ttatcattttcatcttaagaacatcaaacttcttcatct 259  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  972845 ttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 7215522 - 7215448
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaa 300  Q
    |||||||| | |||||||| |||||| ||||| | ||| ||||||||||| || ||||||||||||||| |||||    
T  7215522 attttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaa 7215448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 41264392 - 41264462
Alignment:
Q  224 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    |||||||||||| |||||||| |||||| ||||| |  || ||||||||||| || |||||||||||||||    
T  41264392 tcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgtt 41264462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 254  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 40483703 - 40483783
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    |||||||||| || |||||||||||||||||||||  | ||||||||||| || |||||||| |||||| || ||| |||||    
T  40483703 attttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatc 40483783  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 7215329 - 7215230
Alignment:
Q  81 aacttcttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 180  Q
    |||||||| ||||||||||| || ||||||| | ||||| ||||| ||| ||||| ||||| || || ||||||  ||||||||||||| |||||| |||    
T  7215329 aacttcttttcttcttcattgaatatgtgatctccatct-ttttcattctaaaattgaatcatatttatcattaacggtaaattaccccgaattcaacaa 7215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 37077663 - 37077707
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctc 260  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 39730484 - 39730369
Alignment:
Q  76 cttcgaacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 174  Q
    ||||||||||||| |||| ||||||  || |||| || |||||||| || |||||||||||||||| |||  |||||| || |||||||||||  |||||    
T  39730484 cttcgaacttctttatctccttcatcgaagatgtaatatacatctcgtt-cgttccaaaatcgaattgtatatgtcatgaggggtaaattaccatcaatt 39730386  T
Q  175 catcaaggaaaaatgta 191  Q
    |||  | ||||||||||    
T  39730385 cattcaagaaaaatgta 39730369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 39808291 - 39808239
Alignment:
Q  221 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 273  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacat 39808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 7982444 - 7982353
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    |||| ||| |||||||||||| ||||||||||| ||||||  ||| ||  || ||||||| || |||||||| || |||||| |||||||||    
T  7982444 atcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctcctttgtttcataattgaatc 7982353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 7982284 - 7982214
Alignment:
Q  250 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 320  Q
    |||||||||||||| ||||||||||| || |  ||||| ||| ||||||||||||||  | ||||||||||    
T  7982284 ttcttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaataatatttatcatta 7982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 17736829 - 17736759
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||||||| | |||||| ||||||||||| || || || |||||||||||||| ||| | |||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgt 17736759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 37077760 - 37077870
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 304  Q
    |||||||||| |||| ||| ||||||||||| || ||||||||| ||||| || |  || ||||||||||| || |  || || ||| ||||| ||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattga 37077859  T
Q  305 atcttttttat 315  Q
    ||||| |||||    
T  37077860 atcttatttat 37077870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 17739907 - 17739968
Alignment:
Q  246 aaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    |||||||||||||| ||| ||| ||||||| || |||||||| |||||| |||||| |||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatc 17739968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  225 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 274  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 119 - 361
Target Start/End: Original strand, 39341110 - 39341356
Alignment:
Q  119 tcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttact 215  Q
    ||||| ||||| ||| ||||||| || || || | || ||||||||| || ||||| ||||||||||||| |||||||| |||||    |||||||||||    
T  39341110 tctttacgttctaaagtcgaatcatatttatcgtgaggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttact 39341209  T
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttat 315  Q
    || | ||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||  || | ||| |  ||||||  | ||||||||||| |||||    
T  39341210 atgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttat 39341309  T
Q  316 cattaga-acaaattacccctaatttatcaaaggataacatagacct 361  Q
    |||||||   ||||||||||||||| |||||||| ||||||||||||    
T  39341310 cattagaggtaaattacccctaattcatcaaagggtaacatagacct 39341356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 42091951 - 42091796
Alignment:
Q  122 tttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatagtttttc-ttactatca 219  Q
    |||||||||| |||| | || ||||||| ||||| ||||||||||||||||||| ||||||   | |||||| |||| | ||  |||||| |||| || |    
T  42091951 tttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaatta 42091852  T
Q  220 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||||||||||||| || |||||||||||| |||||||| || ||| |||||||    
T  42091851 attatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgt 42091796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 54437651 - 54437739
Alignment:
Q  219 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||| |||||||||  ||||||||||||||| ||||||| ||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctctttcgttccagaatttaatc 54437739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 46303371 - 46303440
Alignment:
Q  206 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    ||||||||| ||||| ||||||||| ||||  ||| |||||||||||||||||| |||||||||||||||    
T  46303371 ttttcttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgt 46303440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 34762028 - 34761946
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctc 287  Q
    |||||||| | ||||||||||||||||||||  |||| ||||||| | || |||||||| | ||||||||| || ||||||||    
T  34762028 tttttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctc 34761946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 54437848 - 54437949
Alignment:
Q  81 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 179  Q
    |||||||| |||||| |||||||||| ||| ||| ||||| ||||| ||  |||||| |||| || || ||||||||||||||||||||| |||||| ||    
T  54437848 aacttcttcatcttcctcatttaacacgtggtttccatct-ttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaaca 54437946  T
Q  180 agg 182  Q
    |||    
T  54437947 agg 54437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 31758242 - 31758298
Alignment:
Q  204 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcc 261  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||    
T  31758242 gtttttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaatctcc 31758298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 259  Q
    |||||||||| |||| ||| |||||| |||| || ||||||||||||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 48646423 - 48646479
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 273  Q
    |||||| | ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  48646423 atcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 13712945 - 13712743
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa-ggaaa 185  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||||| | ||| ||| |||||||||| | |||||||||| |||| |||||| |||||    
T  13712945 ttatctccttcatttaacatgtgatctacatctctttg-gttccaaaacctaattgtatttgtcattagggataaattaccctcaatacatcaaaggaaa 13712847  T
Q  186 aatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttca 283  Q
    | |||| |||    ||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| ||||||||||||| |||| | ||    
T  13712846 attgtaggcttgctgataaggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctcca 13712747  T
Q  284 tctc 287  Q
    ||||    
T  13712746 tctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 95 - 307
Target Start/End: Complemental strand, 9050313 - 9050098
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 193  Q
    |||||||||||| ||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||  | |||||  |     
T  9050313 ttcatttaacatttgatttacatcttcttt-gtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggt 9050215  T
Q  194 ctcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctcttt 290  Q
    ||| || ||   | |||||||||| |||| ||| ||||||||| | ||||||| ||||||||||||||||| | ||||||||| | || | |||||| ||    
T  9050214 ctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcatt 9050115  T
Q  291 cgtttcagaattgaatc 307  Q
    |||| || ||| |||||    
T  9050114 cgttacaaaatcgaatc 9050098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 16576248 - 16576364
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 304  Q
    |||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| || | | |||| |||||| |||||| ||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcga 16576347  T
Q  305 atcttttttatcattag 321  Q
    ||| |  ||||||||||    
T  16576348 atcatacttatcattag 16576364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 2909844 - 2909956
Alignment:
Q  227 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaacaa 326  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||| |  ||| ||  | ||||||||||| ||||||||||| | ||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgtaatctacatttacttcattctaaaattgaatcttatttatcattaggataa 2909943  T
Q  327 attacccctaatt 339  Q
     | ||||||||||    
T  2909944 ctgacccctaatt 2909956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 16863459 - 16863558
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||||| |||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||| |||| || | |||||| ||||||  ||||| |||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatc 16863558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 34176708 - 34176820
Alignment:
Q  209 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatct 308  Q
    |||||| |||| |||  ||| ||| |||| |||||||||| |||||||||||||| ||| ||||| | || |||||||||||||||||| ||| |||||     
T  34176708 tcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatca 34176807  T
Q  309 tttttatcattag 321  Q
    | ||| |||||||    
T  34176808 tatttttcattag 34176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 38576955 - 38576791
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 193  Q
    |||||| |||||||||||| |||||| |||||| ||| |||| |||| || ||||||||||  |||||||| ||||||||||| ||||   |||||| |     
T  38576955 ttcattcaacatgtgatttccatctc-tttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggc 38576858  T
Q  194 ctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 257  Q
    ||||||||||    |||||||||| |||| ||| ||||||||||| || |  |||||||||||||||    
T  38576857 ctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 320
Target Start/End: Original strand, 16576290 - 16576532
Alignment:
Q  81 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 179  Q
    |||||||| |||| ||||||| |||||||||| | | |||| || ||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||||||    
T  16576290 aacttcttcatctccttcattcaacatgtgatctccttctcatt-cgttccagaatcgaatcatacttatcattaggggtaaattaaccc-aattcatca 16576387  T
Q  180 aggaaaaatgtatgctcatcg-atag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||   || ||| || |  || ||||   |||||||||| |||| ||||||||||||| | || |||| ||||| ||||||| ||||| ||| ||||||     
T  16576388 aggggtaacgtaggccccacggatagagttttttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgc 16576487  T
Q  276 aatgttcatctctttcgtttcagaattgaatcttttttatcatta 320  Q
    ||| | |||||  |||||| ||  |||||||| | ||| ||||||    
T  16576488 aatctccatcttcttcgttacattattgaatcatatttgtcatta 16576532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 38576764 - 38576707
Alignment:
Q  127 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaa 184  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | |||||||||||||    
T  38576764 ttccaaaatcgaatcatacttgtcatttgaggtaaattaccttcgattcatcaaggaa 38576707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 38577001 - 38576924
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgt 293  Q
    |||| ||| ||||||||||| |||||||| ||| ||||||||||| || ||||||||||| || | ||||||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcgt 38576924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 9931337 - 9931406
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaatta 165  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||  | |||||||||    
T  9931337 ttcattttacatgtgatattcatctctttt-gttccaaaatcgaatcgtatttgtcatgtggggtaaatta 9931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 35370402 - 35370471
Alignment:
Q  209 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 278  Q
    |||||| |||| ||| |||||| |||| ||||| | ||||||||||| ||||||| ||||||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaat 35370471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 25606423 - 25606506
Alignment:
Q  95 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 179  Q
    |||||| ||||| |||| |||||||| || ||||||| || |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  25606423 ttcattcaacatatgatatacatctcctt-cgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 309
Target Start/End: Original strand, 34176755 - 34176979
Alignment:
Q  89 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaat 188  Q
    |||| ||||||||||||| |||| | ||||||||| |||| || ||||||||| || || |||||||   | ||||| |||||||||||||  | |||||    
T  34176755 atctccttcatttaacatatgatcttcatctcttt-cgtttcataatcgaatcatatttttcattaggattgaattatccccaattcatcattggaaaat 34176853  T
Q  189 gtatgc-tcatcgatag---tttttct---tactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgtt 281  Q
     || || |||| |||||   |||||||   ||| || | ||| ||||||||||| ||||||  ||||||| | ||||| ||| ||||||||||| || ||    
T  34176854 ctaggcatcattgataggattttttctccttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgatatt 34176951  T
Q  282 catctctttcgtttcagaattgaatctt 309  Q
    ||||   ||| |||||||||||||||||    
T  34176952 catcctcttcatttcagaattgaatctt 34176979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 28282824 - 28282903
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 284  Q
    |||||||||| ||||||||||||||||||||  | || ||||||||| ||||| | |||   |||||||||||| |||||    
T  28282824 tttttcttacaatcaattatcattttcatctccataatatcaaactttttcatttgcttcgctcaacatgtaatcttcat 28282903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 34176654 - 34176697
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatct 259  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||    
T  34176654 atcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 25606366 - 25606455
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    ||||||||||  |||| ||||||||||| ||  ||||||||||| ||||||||||  || ||||||||| | || | |||||| ||||||    
T  25606366 tttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgtt 25606455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 28282699 - 28282791
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 180  Q
    |||||| ||||||| || ||||||| | |||||| || ||||||| |||| |||  ||||||| ||||| |||||||||||  |||||||||||    
T  28282699 ttatctgcttcattcaatatgtgatctccatctcatt-cgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 35371111 - 35371215
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 304  Q
    ||||| |||| |||| ||| ||||||||| | ||||||||||||||||||  |  |||| ||| ||||||| || | |||||| || |||| | ||||||    
T  35371111 ttttttttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctttgtttgataattga 35371210  T
Q  305 atctt 309  Q
    |||||    
T  35371211 atctt 35371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 87 - 263
Target Start/End: Complemental strand, 25234393 - 25234217
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 186  Q
    |||||| ||||||||||  ||||||||| | |||||  |||||||||||||||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  25234393 ttatctccttcatttaaggtgtgatttatacctctta-cgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaa 25234295  T
Q  187 atgtatgctcatcgata-gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 263  Q
    ||||| |||||| |||| | ||||||||  |||| ||| ||||||||||| |||||||||||| ||||| || |||||    
T  25234294 atgtaggctcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatcctt 25234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 25062361 - 25062563
Alignment:
Q  81 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 179  Q
    |||||||| |||| ||||||| |||||||||| | |||||| ||| |||||| |||| |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25062361 aacttcttcatctgcttcattaaacatgtgatcttcatctccttt-gttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatca 25062459  T
Q  180 aggaaaaatgtatgc-tcatcgat----agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 274  Q
    ||||| |||||| || ||| | ||      |||||||||| |||||||| | ||||||||| ||||| ||||||||||||||||| |||  |||||| ||    
T  25062460 aggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttg 25062559  T
Q  275 taat 278  Q
    ||||    
T  25062560 taat 25062563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 15131698 - 15131580
Alignment:
Q  160 aaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttca 256  Q
    |||||||||  ||||||||||| |  |||||| |||||||||||    ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttca 15131599  T
Q  257 tctcctttattcaacatgt 275  Q
    ||||||| ||||| |||||    
T  15131598 tctccttcattcagcatgt 15131580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 22050851 - 22050967
Alignment:
Q  204 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattg 303  Q
    ||||||||||| || | |||||||||| ||||||| ||||  ||  |||||||||||||| ||||||||||| || |||||||| ||| ||||||||| |    
T  22050851 gtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcg 22050950  T
Q  304 aatcttttttatcatta 320  Q
    |||| | ||||||||||    
T  22050951 aatcatatttatcatta 22050967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 131 - 345
Target Start/End: Complemental strand, 54000199 - 53999981
Alignment:
Q  131 aaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcat 227  Q
    |||||||||||||| ||||||| |   ||||||||| | || ||||| ||  |||||||||   |||||||||    ||||||||||||||||||| |||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  228 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaac-aa 326  Q
    |||||||| ||||||||||||    |||||| | |||||||||||||| || | ||| |  ||||||| | |||| |||||| |||||| ||||  | ||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccatttacttcgttttaaaattaaatcttatttatctttagggctaa 54000000  T
Q  327 attacccctaatttatcaa 345  Q
    |||||| |||||| |||||    
T  53999999 attacctctaattcatcaa 53999981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 20512891 - 20512800
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||||| | ||| || ||||||||| ||| |||||    
T  20512891 atcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatc 20512800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 11020144 - 11020059
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaatt 302  Q
    |||| |||||||||||||||||| || ||||||| | || |||||||||||| ||||||| || | |||||||||||||||| ||||    
T  11020144 atcagttatcattttcatcttaaaaatatcaaacctttt-atctcctttatttaacatgtgatttgcatctctttcgtttcaaaatt 11020059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  211 ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 274  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||| |||||| || ||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctc 287  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||| ||||||| || ||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 55897600 - 55897693
Alignment:
Q  87 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 180  Q
    ||||||| |||||| ||||| |||| | |||||||||||||||||||||  |||  ||||||| ||||  |||||| || || |||||||||||    
T  55897600 ttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 54000275 - 54000233
Alignment:
Q  221 ttatcattttcatcttaagaacatcaaacttcttcatctcctt 263  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctcctt 54000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 22050903 - 22050995
Alignment:
Q  89 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 182  Q
    |||| ||||||| |||||||||| | |||||| || | ||| | ||||||||| || || ||||||  ||||||||||||||||||||| ||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttc-agaatcgaatcatatttatcattaagggtaaattacccccaattcataaagg 22050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 46431204 - 46431144
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 286  Q
    ||||| |||| || |||||||||||||||||||| |||  ||||||| ||||| |||||||    
T  46431204 atttttatctcaataacatcaaacttcttcatcttcttagttcaacacgtaatcttcatct 46431144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 10775163 - 10775244
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 286  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||    
T  10775163 tttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatct 10775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 46080971 - 46081044
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 278  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| | ||||||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaat 46081044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 7104297 - 7104367
Alignment:
Q  237 aagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||| || ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  7104297 aagaatattaaatttcttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatc 7104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 7997314 - 7997194
Alignment:
Q  158 gtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 254  Q
    |||||||||||| ||||||||||| |||||||||   |||||||||    ||||||||| ||||||||| |||||||||||  | || ||| ||||||||    
T  7997314 gtaaattaccccaaattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttctt 7997215  T
Q  255 catctcctttattcaacatgt 275  Q
    ||| || || |||||||||||    
T  7997214 catttctttcattcaacatgt 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 34601516 - 34601446
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||| ||| ||||||||  | ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  34601516 tttttcctacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgt 34601446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 52432836 - 52432950
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||||| || | ||||||||||| ||| || |||||||||||||||||| | ||| |||| ||||||||| || ||||||||||||||| |||  ||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgtaatttttatctctttcgtttcataatcaaatc 52432935  T
Q  308 ttttttatcattaga 322  Q
     | ||| ||||||||    
T  52432936 atatttgtcattaga 52432950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 7104215 - 7104271
Alignment:
Q  250 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaat 306  Q
    |||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  7104215 ttcttcatctccttcatgcaacatgtaatattcatctctttcgtttcagaatcgaat 7104271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 3367806 - 3367897
Alignment:
Q  229 ttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 320  Q
    ||||||| |||||||||||| || |||||||| || ||||||||||| || | ||||||||||||| |||||||  ||| | ||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcatta 3367897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 44342145 - 44342055
Alignment:
Q  168 cccaattcatcaaggaaaaatgtatgctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 257  Q
    |||||||||||||||||||||||| ||||| |||||    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||    
T  44342145 cccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatc-attaccattttcatatcaa-aacatcaaacttcttcat 44342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 3232179 - 3232271
Alignment:
Q  89 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 182  Q
    |||||||||||| ||||||| || | ||||||||| | ||| |  |||||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  3232179 atcttcttcattcaacatgtaatctccatctctttac-ttctagtatcgaatcatacttatcattagaggtaaattgcccctaattcatcaagg 3232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 7104316 - 7104400
Alignment:
Q  89 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 174  Q
    |||| ||||||| ||||||| || | ||||||||| |||| || ||||||||| |||||||||||||| |||| ||||||||||||    
T  7104316 atctccttcattcaacatgtaatattcatctcttt-cgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 12144970 - 12145050
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctct 288  Q
    |||||||||| ||||||||||||||| |||| || |   ||||||||||||||||| || ||||||||||| || |||||||||    
T  12144970 tttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtgattttcatctct 12145050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 15321060 - 15321137
Alignment:
Q  224 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 301  Q
    |||||||| ||| || ||||| ||| || ||||| ||||| |||||||||||||| |||||||||||| |||||||||    
T  15321060 tcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctctttcatttcagaat 15321137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 42819621 - 42819674
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatc 258  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  42819621 tttttcttacaatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 52432672 - 52432728
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaaca 272  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| ||||    
T  52432672 atcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaaca 52432728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 34601681 - 34601544
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    ||||||| || | |||| |||||||||| || |||||||||| | ||||||| ||| ||||||||||| || |||||||| ||| ||  | ||| |||||    
T  34601681 ttcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacatgtgatattcatctccttccttataaaatcgaatc 34601583  T
Q  308 ttttttatcattaga-acaaattacccctaatttatcaa 345  Q
     |  || |||||||| |||||||||| ||||||||||||    
T  34601582 atagttgtcattagagacaaattacctctaatttatcaa 34601544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 49897909 - 49897998
Alignment:
Q  78 tcgaacttcttat-cttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 167  Q
    ||||||||||| | || ||||||| |||||||||| | |||||| ||| |||| | ||||||||| || ||||||||||||||||||||||    
T  49897909 tcgaacttcttcttctccttcattcaacatgtgatctccatctccttt-gttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 67982 - 68054
Alignment:
Q  94 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 167  Q
    |||||||  ||||||||| | ||||||||| | ||||||||||| ||| || ||||||||||||||||||||||    
T  67982 cttcattctacatgtgatcttcatctcttt-cattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 68097 - 68186
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    |||||||||| || | ||| |||||| || | ||||||||| ||||||||||||||||| ||| ||||||| || | ||||| |||||||    
T  68097 tttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgtt 68186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  81 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaat 140  Q
    |||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  68139 aacttcttcatctccttcatttaacatgtgatctccatct-ttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 3231979 - 3232047
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 294  Q
    |||||||||| ||||||| ||||||||||||| || || ||||||||||| || |||| ||| ||||||    
T  3231979 attttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattcacctccttcgtt 3232047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 49897870 - 49897940
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||||||| || ||||| |||||| | || |||||| || ||||||||| ||||||| |||||||||||    
T  49897870 tttttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgt 49897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 38839715 - 38839666
Alignment:
Q  226 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||| ||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgt 38839666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 10775028 - 10775096
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 284  Q
    ||||| ||||||||||||||  ||||||||||| |||||| |||  || ||||||||||| || |||||    
T  10775028 atcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcat 10775096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 20068000 - 20068200
Alignment:
Q  123 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag---tttttcttactatc 218  Q
    ||||||||| ||||||||| |||||||| |||  |||||||||||  ||||||||||| | |||||||| | |||||| ||||   |||||||||| |||    
T  20068000 ttcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgctttttcttacaatc 20068099  T
Q  219 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcat 318  Q
     | || ||||||||| |  ||||||||||||||| ||||||| || ||||||||||| || || ||||  |||  ||||||||  ||||||  |||||||    
T  20068100 -agtaccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgtcatctttatcttcttcagttcagaataaaatcttacttatcat 20068198  T
Q  319 ta 320  Q
    ||    
T  20068199 ta 20068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 32342600 - 32342669
Alignment:
Q  205 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 274  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||    
T  32342600 tttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 23577118 - 23577252
Alignment:
Q  174 tcatcaaggaaaaatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaac 271  Q
    |||| ||||||||||||| |||||  ||||  |||||||||| || || ||| ||||||||||| || ||||||| |||||| ||||||||| |||||||    
T  23577118 tcatgaaggaaaaatgtaggctcaatgatatggtttttcttagtaacagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaac 23577217  T
Q  272 atgtaatgttcatctctttcgtttcagaattgaat 306  Q
    || | || | ||| |  ||||||||| ||||||||    
T  23577218 atctgatatacatttacttcgtttcaaaattgaat 23577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 32047194 - 32047291
Alignment:
Q  225 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattaga 322  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||| | || ||| |||  ||| || || ||||||||| |  |||||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattaga 32047291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 20206527 - 20206481
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 254  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 22100550 - 22100504
Alignment:
Q  208 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 254  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 23577009 - 23577093
Alignment:
Q  206 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctcttt 290  Q
    |||| |||| |||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||| || |||| || | |||||||||    
T  23577009 tttttttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatttaagatgttatttacatctcttt 23577093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 32047262 - 32047317
Alignment:
Q  127 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 182  Q
    ||||| ||| ||||| ||||| ||||||||||||||||| || |||||||||||||    
T  32047262 ttccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagg 32047317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 7716786 - 7716732
Alignment:
Q  247 aacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 301  Q
    ||||| ||||| ||||| |||||||||||||| |||||||| ||||||| |||||    
T  7716786 aactttttcatttccttcattcaacatgtaattttcatctcattcgttttagaat 7716732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 23577068 - 23577121
Alignment:
Q  98 atttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcat 152  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||| |||||||    
T  23577068 atttaagatgttatttacatctctttta-ttccaaaatcgaatcgtatttgtcat 23577121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 26236797 - 26236751
Alignment:
Q  133 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 179  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  26236797 aatcgaatcatacttattattagaggtaaattacccccaatttatca 26236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 37033 - 36946
Alignment:
Q  221 ttatcattttcatcttaaga-acatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 307  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||||||||| || |||||||| || |||||| ||| |||||    
T  37033 ttatcattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatc 36946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 794 - 853
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 275  Q
    |||| ||||||||||| | | ||| | ||||||||||||||||||||| |||||||||||    
T  794 atcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 62791 - 62744
Alignment:
Q  216 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 263  Q
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T  62791 atcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

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