View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_13 (Length: 533)
Name: NF19628_low_13
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 35909769 - 35909265
Alignment:
| Q |
18 |
agtaaagtgttatcagtgtaaacactgaacttgagattgtgtggcatccactagaatcttgtacaatccaaccatttgctcagccaaaccaataatcatc |
117 |
Q |
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| T |
35909769 |
agtaaagtgttatcagtgtaaacactgaacttgagattgtg--gcatccactagaatcttgtacattccaaacatttgctcagccaaaccaataatcatc |
35909672 |
T |
|
| Q |
118 |
ttggatttggaatcttgtatgatacattgtgaataagaaaattcaagattgcaataagagtgattgtatagttgtaaaactgatatcaaatttaaagaaa |
217 |
Q |
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| T |
35909671 |
ttggatttggaatcttgtatgatacattgtgaataagaaaattcaagattgcaataagagtgattgtatagttgtaaaactgatatcaaatttaaagaaa |
35909572 |
T |
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| Q |
218 |
aatgtggtaataataagattcatttgttttatgaccaaaatgagctttggagctaacatgattggtttgatgttgaggcaccttatcagaatagagggac |
317 |
Q |
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| T |
35909571 |
aatgtggtaatagtaagattaatttgttttatgaccaaaatgagctttggagcta-catgattggtttgatgttgaggcaccttatcagaatagagggac |
35909473 |
T |
|
| Q |
318 |
caaggctacaagactgtcaaactgctcttgaataaacaatggttcaaaatgagattgagatatttgtgactctttgacataccctgtcacattgccattt |
417 |
Q |
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| T |
35909472 |
caaggctacaagactgtcaaactgctcttgaataaacaatggttctaaatgagattgagatatttgtgactctttgacataacctgtcacattgccattt |
35909373 |
T |
|
| Q |
418 |
agataattatgctttatatagcatgtatcaacacatggcacaagtccatgctaaataattcacacattctagtttgggtgtaaccgccacataattggga |
517 |
Q |
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| T |
35909372 |
agataattatgctttatatagcatgtatcaacacatggcacaagtccatgctaaataattcacacattctagtttgggtgtaaccgccacatatttggga |
35909273 |
T |
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| Q |
518 |
cctttgct |
525 |
Q |
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| T |
35909272 |
cctttgct |
35909265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 28670206 - 28670131
Alignment:
| Q |
76 |
ttgtacaatccaaccatttgctcagccaaaccaataatcatcttggatttggaatcttgtatgatacattgtgaat |
151 |
Q |
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|||||||||||| || ||||||||| |||||||| ||| || ||||||||||||| | ||| | ||||||||||| |
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| T |
28670206 |
ttgtacaatccattcacttgctcagcaaaaccaatcatcctcctggatttggaatcctatattacacattgtgaat |
28670131 |
T |
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