View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_low_14 (Length: 515)

Name: NF19628_low_14
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_low_14
NF19628_low_14
[»] chr6 (18 HSPs)
chr6 (18-497)||(6472061-6472540)
chr6 (18-499)||(6506162-6506643)
chr6 (331-499)||(13035068-13035236)
chr6 (18-215)||(6466293-6466490)
chr6 (18-158)||(6529216-6529356)
chr6 (18-151)||(6519591-6519724)
chr6 (26-159)||(6497689-6497822)
chr6 (25-159)||(6460849-6460983)
chr6 (241-426)||(6461053-6461238)
chr6 (267-388)||(6528992-6529113)
chr6 (33-142)||(7204144-7204254)
chr6 (33-142)||(7238895-7239005)
chr6 (18-159)||(6515110-6515251)
chr6 (45-127)||(6458424-6458506)
chr6 (241-347)||(6497513-6497619)
chr6 (265-382)||(6466132-6466249)
chr6 (241-361)||(6519802-6519922)
chr6 (318-372)||(6515419-6515473)
[»] chr7 (4 HSPs)
chr7 (18-159)||(9664321-9664462)
chr7 (33-127)||(3752864-3752958)
chr7 (18-127)||(4047280-4047389)
chr7 (327-382)||(9664627-9664682)
[»] chr4 (3 HSPs)
chr4 (18-159)||(13535345-13535486)
chr4 (333-464)||(49570023-49570153)
chr4 (327-382)||(13535651-13535706)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 6472061 - 6472540
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  6472061 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacctgaatacattcatccttacc 6472160  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatccattccaccactttaattcagctttcatatatcaagttttcaatgctgatctcaccataat 217  Q
    |||||||||| ||  ||||||||||||| ||||| || || || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||     
T  6472161 tcatcaaatcatcaaactcatcactttctgtttcttacccttttcaccacttcaattcagctttcatataccaagttttcaatgctgatctcaccataac 6472260  T
Q  218 ttctatagaacagaaaaccaatcaaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  6472261 ttctatagaacagaaaaccaatcaaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggacatgccttctacaaatatg 6472360  T
Q  318 agtttcttccttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctctt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  6472361 agtttcttccttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacacctctttccatttccaccattcatgccattctttccttctctt 6472460  T
Q  418 cgaatgataaccttaacaaattcacctttcatcttaacaatgatcaaatatggatcctatatgcttcctcaccgatcaag 497  Q
    | ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  6472461 caaatgaaaaccttaccaaattcacctttcatcttaacaatgatcaaacatggatcctatacgcttcctcgccgatcaag 6472540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 6506643 - 6506162
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||   |||||||||| ||||||||||||    
T  6506643 ttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatgcacctgaatactttcatccttacc 6506544  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatccattccaccacttt-aattcagctttcatatatcaagttttcaatgctgatctcaccataa 216  Q
    |||||||||| ||  ||||||||||||| || ||||| || | |   | |||  ||||| ||| ||||||  ||||||||| |   ||||||||||||||    
T  6506543 tcatcaaatcatcaaactcatcactttctgtctcataccc-tactcgctcttcgaattctgctgtcatatcccaagttttccacaatgatctcaccataa 6506445  T
Q  217 tttctatagaacagaaaaccaatcaaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatat 316  Q
     |||||   ||||||| ||||| |||| ||| |||| |||||||||| ||||||| |||||||||||| |||| ||||| ||||| |||||||| ||| |    
T  6506444 cttctaatcaacagaataccaaacaaagttctaatggaaaacacataatctcttcttatagtgatctcggtgttaccttagatatcccttcttcaaatct 6506345  T
Q  317 gagtttcttccttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctct 416  Q
     |||||||| ||||||||||||||||| | | ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||  ||| ||||||    
T  6506344 cagtttctttcttgttagaggaagtccttatttgactttttctgtaacaaaaccaacccctctttccatttccaccattcatgccattacttctttctct 6506245  T
Q  417 tcgaatgataaccttaacaaattcacctttcatcttaacaatgatcaaatatggatcctatatgcttcctcaccgatcaagtt 499  Q
    || |||     ||||| ||   |||  ||||| |||||||||| ||||| |||||| |||||||||||||| || ||||||||    
T  6506244 tcaaatagcgcccttaccaggatcaagtttcaacttaacaatggtcaaacatggatactatatgcttcctcgccaatcaagtt 6506162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 331 - 499
Target Start/End: Original strand, 13035068 - 13035236
Alignment:
Q  331 ttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttcgaatgataacct 430  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  13035068 ttagaggaagtccctttttgactgtttctgtaacaaaaccaacacctctttccatttccaccattcatgccattctttccttttcttcaaatgataacct 13035167  T
Q  431 taacaaattcacctttcatcttaacaatgatcaaatatggatcctatatgcttcctcaccgatcaagtt 499  Q
    || |||||||||||||||||||||||||||||||  |||||||||||| |||||||  || ||||||||    
T  13035168 taccaaattcacctttcatcttaacaatgatcaagcatggatcctatacgcttccttgccaatcaagtt 13035236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 6466490 - 6466293
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  6466490 ttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatc 6466391  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatccattccaccactttaattcagctttcatatatcaagttttcaatgctgatctcaccata 215  Q
    |||||||||||||  |||||||||||||  |||| || ||||  |    ||| || ||  |||||||||| |||||||||||  ||||||||||||||    
T  6466390 tcatcaaatcttcaaactcatcactttctctttcttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctgatctcaccata 6466293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 6529356 - 6529216
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |    
T  6529356 ttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccatatc 6529257  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatcca 158  Q
    |||||||||||||  |||||||||||||  |||| ||||||    
T  6529256 tcatcaaatcttcagactcatcactttctatttcctatcca 6529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 6519591 - 6519724
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  6519591 ttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacc 6519690  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttc 151  Q
    |||| ||||| ||  ||||||||||||| |||||    
T  6519691 tcattaaatcatcaaactcatcactttctgtttc 6519724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 6497822 - 6497689
Alignment:
Q  26 aaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacctcatcaaa 125  Q
    |||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||    
T  6497822 aaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaa 6497723  T
Q  126 tcttcgcactcatcactttcagtttcatatccat 159  Q
    || ||  ||||||||||||| |||||||||||||    
T  6497722 tcatcagactcatcactttctgtttcatatccat 6497689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 6460849 - 6460983
Alignment:
Q  25 caaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacctcatcaa 124  Q
    ||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||     
T  6460849 caaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcag 6460948  T
Q  125 atcttcgcactcatcactttcagtttcatatccat 159  Q
    ||||||  ||||||| ||||| || ||||||||||    
T  6460949 atcttccaactcatctctttctgtctcatatccat 6460983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 426
Target Start/End: Original strand, 6461053 - 6461238
Alignment:
Q  241 aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaag 340  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||| |||||| ||||  | |  ||||||||||| ||||||||    
T  6461053 aaacttccaatgaaaaacatgtagtctcttcctttagtgatctcagtgtcaccttagatatcccttctgccaacctcaccttcttccttgtaagaggaag 6461152  T
Q  341 tccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttcgaatgata 426  Q
    ||| ||| | ||| | ||||| ||| || ||||||| ||||| ||  | || |||||| |||||| ||| || ||||| |||||||    
T  6461153 tccttttttaactttctctgtgacagaatcaacacctctttctatcactactattcattccattcattccttttcttcaaatgata 6461238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 6529113 - 6528992
Alignment:
Q  267 tcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaagtccctttctgactgtttctgtaacaa 366  Q
    |||||||||||||||||||||||||| || || || |||||  |||| ||||||||||| ||||||||||||||||| | | ||||| ||||||||||||    
T  6529113 tcttcctatagtgatctcagtgtcacgttagacattccttcaaccaacatgagtttctttcttgttagaggaagtccttatttgactctttctgtaacaa 6529014  T
Q  367 aaccaacaccactttccatttc 388  Q
    ||||| | || |||||||||||    
T  6529013 aaccagcccctctttccatttc 6528992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 7204144 - 7204254
Alignment:
Q  33 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatcttcg 131  Q
    ||||||||||||| |||| || |  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||||| |||    
T  7204144 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatcg 7204243  T
Q  132 cactcatcact 142  Q
     ||||| ||||    
T  7204244 aactcaccact 7204254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 7238895 - 7239005
Alignment:
Q  33 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatcttcg 131  Q
    ||||||||||||| |||| || |  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||||| |||    
T  7238895 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatcg 7238994  T
Q  132 cactcatcact 142  Q
     ||||| ||||    
T  7238995 aactcaccact 7239005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 6515110 - 6515251
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||||||  ||||| | | |||||   |||||||||||| ||||||||||    
T  6515110 ttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatccttacc 6515209  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatccat 159  Q
    |||||| |||  |  |||||||||||||  ||||||| ||||    
T  6515210 tcatcagatcaacaaactcatcactttctttttcatacccat 6515251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 6458506 - 6458424
Alignment:
Q  45 ctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatc 127  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||||  |||||| |||||||| |||||||||||||||||    
T  6458506 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatc 6458424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 6497619 - 6497513
Alignment:
Q  241 aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaag 340  Q
    |||||||||||||||||||  |||| ||||| | |||||||||| |||||||||| ||||| |||||||| ||| | |  ||||||||||| ||||||||    
T  6497619 aaacttccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctcaccttcttccttgtaagaggaag 6497520  T
Q  341 tcccttt 347  Q
    |||||||    
T  6497519 tcccttt 6497513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 382
Target Start/End: Complemental strand, 6466249 - 6466132
Alignment:
Q  265 tctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaagtccctttctgactgtttctgtaac 364  Q
    ||||||| || | |||||||||||| || |||||||| ||||| || ||| || | || || ||||||||||||||||||||| ||||  | ||||||||    
T  6466249 tctcttcttacaatgatctcagtgttacattggatataccttcatcaaatctgcggttttttcttgttagaggaagtccctttttgacattctctgtaac 6466150  T
Q  365 aaaaccaacaccactttc 382  Q
    | |||||||||| |||||    
T  6466149 acaaccaacacctctttc 6466132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 361
Target Start/End: Original strand, 6519802 - 6519922
Alignment:
Q  241 aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaag 340  Q
    |||||||||| |||||||||||| ||||||| || | ||| |||||||| |||||||| || |||||||| ||| |  |||| || |||||||| |||||    
T  6519802 aaacttccaacgaaaaacacataatctcttcttacaatgacctcagtgttaccttggaaatcccttcttcaaatttacgtttttttcttgttaggggaag 6519901  T
Q  341 tccctttctgactgtttctgt 361  Q
    ||| ||| ||||  |||||||    
T  6519902 tccttttttgacattttctgt 6519922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 6515419 - 6515473
Alignment:
Q  318 agtttcttccttgttagaggaagtccctttctgactgtttctgtaacaaaaccaa 372  Q
    |||||||| ||||||||||||||||| | | ||||| | ||||||||||||||||    
T  6515419 agtttctttcttgttagaggaagtccatatttgactttctctgtaacaaaaccaa 6515473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 9664321 - 9664462
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| |    
T  9664321 ttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcacccttatc 9664420  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatccat 159  Q
    || ||||||| ||| |||||||||||||  |||| |||||||    
T  9664421 tcgtcaaatcgtcgaactcatcactttctctttcgtatccat 9664462  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 3752864 - 3752958
Alignment:
Q  33 ctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  ||||||||||||||| |||||||||||||||||    
T  3752864 ctatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 3752958  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 4047389 - 4047280
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||||| ||| || ||||||||||| |||||||||||||| ||||||||||| ||||||||  |||||||||| |||| |||||||||||| |||||||    
T  4047389 ttctcacaaaacttactatccacacctctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttacc 4047290  T
Q  118 tcatcaaatc 127  Q
    |  |||||||    
T  4047289 ttgtcaaatc 4047280  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 9664627 - 9664682
Alignment:
Q  327 cttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttc 382  Q
    |||||||| |||||||| ||||||||| | || ||||||||||||||||| |||||    
T  9664627 cttgttaggggaagtccatttctgactttatccgtaacaaaaccaacacctctttc 9664682  T

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Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 13535345 - 13535486
Alignment:
Q  18 ttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccttacc 117  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| |    
T  13535345 ttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcacccttatc 13535444  T
Q  118 tcatcaaatcttcgcactcatcactttcagtttcatatccat 159  Q
    || ||||||| ||| |||||||||||||  |||| |||||||    
T  13535445 tcgtcaaatcgtcgaactcatcactttctctttcgtatccat 13535486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 464
Target Start/End: Complemental strand, 49570153 - 49570023
Alignment:
Q  333 agaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttcgaatgataacctta 432  Q
    ||||||||||||  | ||||||||||| | ||| |||||||||| ||||| || ||||||||||||||  || |||| |||||||| |||  |||| |||    
T  49570153 agaggaagtcccaatttgactgtttctatgacagaaccaacacctctttcaatctccaccattcatgctgttgtttccttctcttcaaattttaacttta 49570054  T
Q  433 acaaattcacctttcatcttaacaatgatcaa 464  Q
      || || |||||||| | |||||||||||||    
T  49570053 ctaagtttacctttca-cctaacaatgatcaa 49570023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 13535651 - 13535706
Alignment:
Q  327 cttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttc 382  Q
    |||||||| |||||||| ||||||||| | || ||||||||||||||||| |||||    
T  13535651 cttgttaggggaagtccatttctgactttatccgtaacaaaaccaacacctctttc 13535706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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