View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19628_low_15 (Length: 511)
Name: NF19628_low_15
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_15 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 48020304 - 48019822
Alignment:
| Q |
15 |
tcacattcttaaaacctcccaaacccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccccaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020304 |
tcacattcttaaaacctcccaaacccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccccaa |
48020205 |
T |
|
| Q |
115 |
tttccccggttcatcaacacaatctcgaccaatcttcggatccaaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020204 |
tttccccggttcatcaacacaatctcgaccaatcttcggatccaaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgct |
48020105 |
T |
|
| Q |
215 |
ttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020104 |
ttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagat |
48020005 |
T |
|
| Q |
315 |
tatgttgacgatgagtgataacgtggaagggagaaagcaaagtagtgacatggcgataagaatctgcgtttgggagacgaagcttgacttcaacctccat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020004 |
tatgttgacgatgagtgataacgtggaagggagaaagcaaagtagtgacacggtgataagaatctgcgtttgggagacgaagcttgacttcaacctccat |
48019905 |
T |
|
| Q |
415 |
atcggaaggggaaagagagaaggagcgtgttgagaagagtttaggaggagagaccaatgcgattcgctttggaagaagaatct |
497 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48019904 |
atcggaaggggaaagagaaaaggagcgtgttgagaagagtttaggaggagagaccaatgcgattcgctttggaagaagaatct |
48019822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 15 - 419
Target Start/End: Complemental strand, 48025093 - 48024686
Alignment:
| Q |
15 |
tcacattcttaaaacctcccaaacccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccccaa |
114 |
Q |
| |
|
|||||||| ||||| | || ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |
|
|
| T |
48025093 |
tcacattcctaaaatcccctaaacccacaaacccatttttaccaaccaccccaaattcctccttcactctccccataatcctggaatccacaaaacccaa |
48024994 |
T |
|
| Q |
115 |
t---ttccccggttcatcaacacaatctcgaccaatcttcggatccaaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgccttt |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||| || | || |||||| | ||| |
|
|
| T |
48024993 |
caacttccccggttcatcaacgcaatctcgaccaatcttcggatccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaacccctttt |
48024894 |
T |
|
| Q |
212 |
gctttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaaga |
311 |
Q |
| |
|
||||| | ||||| |||||||||||||| ||| |||||||| | ||||| | || ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
48024893 |
gctttaagtgaaacgacacaccgttcatcatcattatagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagt |
48024794 |
T |
|
| Q |
312 |
gattatgttgacgatgagtgataacgtggaagggagaaagcaaagtagtgacatggcgataagaatctgcgtttgggagacgaagcttgacttcaacctc |
411 |
Q |
| |
|
| || |||||| |||| ||||| |||||||||||||| ||||||| ||||| ||||||| || || ||||||| |||||| ||||| ||||| || || |
|
|
| T |
48024793 |
ggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttc |
48024694 |
T |
|
| Q |
412 |
catatcgg |
419 |
Q |
| |
|
||| |||| |
|
|
| T |
48024693 |
catttcgg |
48024686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 38 - 356
Target Start/End: Complemental strand, 13841 - 13523
Alignment:
| Q |
38 |
cccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccccaatttccccggttcatcaacacaat |
137 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||| |||||||||| ||| |
|
|
| T |
13841 |
cccacaaacccatttttacccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacccaacttccccagttcatcaacggaat |
13742 |
T |
|
| Q |
138 |
ctcgaccaatcttcggatccaaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgctttcaacgaaacaacacaccgttc |
237 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| || ||||||| ||| || | || |||||| | |||||||| | ||||| ||||||||||| |
|
|
| T |
13741 |
ctcgaccaatcttcggatccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttc |
13642 |
T |
|
| Q |
238 |
atcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacgatgagtgataacg |
337 |
Q |
| |
|
||| ||| ||||||||| | |||| | || ||||||||||||||||| || | ||||||||||||||| | || |||||| |||| ||||| ||| |
|
|
| T |
13641 |
atcatcattgtagaatcgaaaacgaaatgtggctcgacgagaagagagttcggaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacg |
13542 |
T |
|
| Q |
338 |
tggaagggagaaagcaaag |
356 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
13541 |
tggaagggagagagcaaag |
13523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 51934697 - 51934295
Alignment:
| Q |
12 |
tcatcacattcttaaaacctcccaaacccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccc |
111 |
Q |
| |
|
||||||||||| ||||| | | || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| || || |
|
|
| T |
51934697 |
tcatcacattcctaaaatcctctaatcccacaaacccatttttacccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacc |
51934598 |
T |
|
| Q |
112 |
caatttccccggttcatcaacacaatctcgaccaatcttcggatccaaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgccttt |
211 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||||| || |||| || ||| || | || |||||| | ||| |
|
|
| T |
51934597 |
caacttccctggttcatcaacggaatctcgaccaatcttcggatccaaatcttcctcgtcttcctctacacaacgcacgccgttgactagaacccctttt |
51934498 |
T |
|
| Q |
212 |
gctttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaaga |
311 |
Q |
| |
|
||||| | ||||| |||||||||||||| ||| ||||||| | |||| | || ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
51934497 |
gctttaagtgaaacgacacaccgttcatcatcattatagaatcaaaaacgaaatgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagt |
51934398 |
T |
|
| Q |
312 |
gattatgttgacgatgagtgataacgtggaagggagaaagcaaagtagtgacatggcgataagaatctgcgtttgggagacgaagcttgacttcaacctc |
411 |
Q |
| |
|
| || |||||| |||| ||||| |||||||||||||| ||||||| ||||| ||||||| || || ||||||| |||||| ||||| ||||| || || |
|
|
| T |
51934397 |
ggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttc |
51934298 |
T |
|
| Q |
412 |
cat |
414 |
Q |
| |
|
||| |
|
|
| T |
51934297 |
cat |
51934295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University