View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_16 (Length: 498)
Name: NF19628_low_16
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 208 - 488
Target Start/End: Original strand, 25450588 - 25450868
Alignment:
| Q |
208 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
307 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450588 |
tataggtgtactgagaacaaatccttcctaattacactatgacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatca |
25450687 |
T |
|
| Q |
308 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450688 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
25450787 |
T |
|
| Q |
408 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatacagcagaaatatattagcctttg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25450788 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatatagcagaaatatattagcctttg |
25450868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 207 - 488
Target Start/End: Original strand, 25446024 - 25446305
Alignment:
| Q |
207 |
ttataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatc |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446024 |
ttataggtgtactgagaacaaatccttcctaattacactatgacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatc |
25446123 |
T |
|
| Q |
307 |
aactgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgca |
406 |
Q |
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| T |
25446124 |
aattgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgca |
25446223 |
T |
|
| Q |
407 |
tttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatacagcagaaatatattagcctttg |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
25446224 |
tttgattaccttgtaaagcttggacagctataaagccttgtacaaccgtgtgtaaaatatagcagaaatatattagcctttg |
25446305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 208 - 488
Target Start/End: Original strand, 31901329 - 31901611
Alignment:
| Q |
208 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31901329 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatca |
31901428 |
T |
|
| Q |
308 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
407 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31901429 |
actgtcattagtcagtaaagttgacttaccttattcatgtacaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcat |
31901528 |
T |
|
| Q |
408 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatatattagcctttg |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
31901529 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaagatatagcataaatatattagcctttg |
31901611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 251 - 488
Target Start/End: Original strand, 31925239 - 31925477
Alignment:
| Q |
251 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgtaca |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
|
| Q |
351 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
450 |
Q |
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||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
|
| Q |
451 |
gccgtgtgtaaa--atacagcagaaatatattagcctttg |
488 |
Q |
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||||||||||| ||| |||| ||||||||||||||||| |
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| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttg |
31925477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 208 - 488
Target Start/End: Complemental strand, 2607125 - 2606843
Alignment:
| Q |
208 |
tataggtgtactgagaacaaatccttcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
307 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2607125 |
tataggcgtactgagaacaaatccatcctgattacactatgacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatca |
2607026 |
T |
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| Q |
308 |
actgtcattagtcagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcat |
407 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2607025 |
attgtcattagttagtacaattgacttaccttattcatgtacaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcat |
2606926 |
T |
|
| Q |
408 |
ttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatatattagcctttg |
488 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
2606925 |
ttgattaccttgtaaagcttggacatctataaagccttgtacagccatgtgtaaaatatatagcagaaatatattagcctttg |
2606843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 31138015 - 31137826
Alignment:
| Q |
18 |
ggtgggtatgggtgaataatgttattatattttttctttgaaaaaatgttatgcgattacacttgggagtccatttgagtctgcttcaacacgtcaattt |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31138015 |
ggtgggtatgtgtgaataatgttattatattttttctttgaaaaaatgttatgcgattacacttggtagtccatttgagtctgcttcaacacgtcaattt |
31137916 |
T |
|
| Q |
118 |
gaaaacatgattatgcaaaatattttctggacggagctcaatacgacgtacannnnnnnnaacctttcggttttctgaaaatgtggacttt |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31137915 |
gaaaacatgattatg-taaatattttctggacggagctcaatacgacgtacattttttttaacctttcggttttctgaaaatgtggacttt |
31137826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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