View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_low_17 (Length: 498)

Name: NF19628_low_17
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_low_17
NF19628_low_17
[»] chr4 (8 HSPs)
chr4 (1-331)||(3670517-3670847)
chr4 (335-485)||(3670328-3670481)
chr4 (62-93)||(49211849-49211880)
chr4 (56-90)||(55157627-55157661)
chr4 (61-90)||(3673427-3673456)
chr4 (62-90)||(8179912-8179940)
chr4 (62-90)||(24972272-24972300)
chr4 (62-90)||(48007294-48007322)
[»] chr8 (2 HSPs)
chr8 (5-63)||(9891982-9892040)
chr8 (62-90)||(8051935-8051963)
[»] chr7 (4 HSPs)
chr7 (62-93)||(4125478-4125509)
chr7 (62-93)||(24507866-24507897)
chr7 (62-90)||(4125745-4125773)
chr7 (62-90)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (62-93)||(7725536-7725567)
chr5 (62-90)||(8383971-8383999)
chr5 (62-90)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (62-92)||(2109-2139)
[»] chr6 (1 HSPs)
chr6 (62-90)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (62-90)||(22200607-22200635)
[»] chr2 (1 HSPs)
chr2 (62-90)||(18176881-18176909)
[»] chr1 (8 HSPs)
chr1 (62-90)||(10544172-10544200)
chr1 (62-90)||(17414743-17414771)
chr1 (62-90)||(17415358-17415386)
chr1 (62-90)||(18459589-18459617)
chr1 (62-90)||(18459751-18459779)
chr1 (62-90)||(33024673-33024701)
chr1 (62-90)||(49915876-49915904)
chr1 (62-90)||(52053867-52053895)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 3670847 - 3670517
Alignment:
Q  1 tacattttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaattatacaatgaatattttatattctaatagttaaattag 100  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  3670847 tacattttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaattatgcaatggatattttatattctaatagttaaattag 3670748  T
Q  101 tagatgtctataacaatttcttagactagaattcctataatatacacaaaagcatgcatgataagtggaaaatagatcctctagagtcatcaaatcggtg 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670747 tagatgtctataacaacttcttagactagaattcctataatatacacaaaagcatgcatgataagtggaaaatagatcctctagagtcatcaaatcggtg 3670648  T
Q  201 taacaagatctcgaccgttggattgagttgcacctcaaatccaatggttcaaaattttatgcaccgaccggaggactacaaaggatccaagctaacgagt 300  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||| ||||||    
T  3670647 tagcaagatctcgaccgttggattgagttgcacctcaaatccaatggttcgaaattttatgcaccaactggaggactacagaggatccaagctgacgagt 3670548  T
Q  301 aacgttctaattccaaattaaatgttcttca 331  Q
    |||||||||||||||||||||||||||||||    
T  3670547 aacgttctaattccaaattaaatgttcttca 3670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 335 - 485
Target Start/End: Complemental strand, 3670481 - 3670328
Alignment:
Q  335 gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttttagaattcatca---tgtccagctgaaaatgttcttgattttcagaag 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||    
T  3670481 gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttctagaattcatcaacatgtccagctgaaaatgttcttgattttcagaag 3670382  T
Q  432 ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataat 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670381 ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataat 3670328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 49211849 - 49211880
Alignment:
Q  62 ttatacaatgaatattttatattctaatagtt 93  Q
    ||||||||||||||||||||||||||||||||    
T  49211849 ttatacaatgaatattttatattctaatagtt 49211880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 55157661 - 55157627
Alignment:
Q  56 aacaaattatacaatgaatattttatattctaata 90  Q
    ||||| |||||||||||||||||||||||||||||    
T  55157661 aacaatttatacaatgaatattttatattctaata 55157627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 3673427 - 3673456
Alignment:
Q  61 attatacaatgaatattttatattctaata 90  Q
    ||||||||||||||||||||||||||||||    
T  3673427 attatacaatgaatattttatattctaata 3673456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 8179912 - 8179940
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  8179912 ttatacaatgaatattttatattctaata 8179940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 24972272 - 24972300
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  24972272 ttatacaatgaatattttatattctaata 24972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 48007294 - 48007322
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  48007294 ttatacaatgaatattttatattctaata 48007322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 9892040 - 9891982
Alignment:
Q  5 ttttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaatt 63  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  9892040 ttttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaatt 9891982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 8051935 - 8051963
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  8051935 ttatacaatgaatattttatattctaata 8051963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Complemental strand, 4125509 - 4125478
Alignment:
Q  62 ttatacaatgaatattttatattctaatagtt 93  Q
    ||||||||||||||||||||||||||||||||    
T  4125509 ttatacaatgaatattttatattctaatagtt 4125478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 24507866 - 24507897
Alignment:
Q  62 ttatacaatgaatattttatattctaatagtt 93  Q
    ||||||||||||||||||||||||||||||||    
T  24507866 ttatacaatgaatattttatattctaatagtt 24507897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 4125745 - 4125773
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  4125745 ttatacaatgaatattttatattctaata 4125773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 13298805 - 13298777
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  13298805 ttatacaatgaatattttatattctaata 13298777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Complemental strand, 7725567 - 7725536
Alignment:
Q  62 ttatacaatgaatattttatattctaatagtt 93  Q
    ||||||||||||||||||||||||||||||||    
T  7725567 ttatacaatgaatattttatattctaatagtt 7725536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 8383999 - 8383971
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  8383999 ttatacaatgaatattttatattctaata 8383971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 38378248 - 38378220
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  38378248 ttatacaatgaatattttatattctaata 38378220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 92
Target Start/End: Original strand, 2109 - 2139
Alignment:
Q  62 ttatacaatgaatattttatattctaatagt 92  Q
    |||||||||||||||||||||||||||||||    
T  2109 ttatacaatgaatattttatattctaatagt 2139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 17945301 - 17945329
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  17945301 ttatacaatgaatattttatattctaata 17945329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 22200635 - 22200607
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  22200635 ttatacaatgaatattttatattctaata 22200607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 18176881 - 18176909
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  18176881 ttatacaatgaatattttatattctaata 18176909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 10544172 - 10544200
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  10544172 ttatacaatgaatattttatattctaata 10544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 17414771 - 17414743
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  17414771 ttatacaatgaatattttatattctaata 17414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 17415358 - 17415386
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  17415358 ttatacaatgaatattttatattctaata 17415386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 18459589 - 18459617
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  18459589 ttatacaatgaatattttatattctaata 18459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 18459751 - 18459779
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  18459751 ttatacaatgaatattttatattctaata 18459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 33024701 - 33024673
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  33024701 ttatacaatgaatattttatattctaata 33024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 49915904 - 49915876
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  49915904 ttatacaatgaatattttatattctaata 49915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 52053867 - 52053895
Alignment:
Q  62 ttatacaatgaatattttatattctaata 90  Q
    |||||||||||||||||||||||||||||    
T  52053867 ttatacaatgaatattttatattctaata 52053895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University