View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_21 (Length: 441)
Name: NF19628_low_21
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 23535427 - 23535029
Alignment:
| Q |
18 |
acaacgtatgctccatttttacatgcacctagctaacttgctagatccaatgcaataataattgtagacaatagtatcaatattcttttgacgccaaata |
117 |
Q |
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| T |
23535427 |
acaacgtatgctccatttttacatgcacctagctaacttgctagatccaatgcaataataattgtagacaatagtatcaatattcttttgacgccaaata |
23535328 |
T |
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| Q |
118 |
cataatttccttgttgagttgccataatgagaagaggactcttcccacttgatggtggaaggttgtacatgaatccctttaatttcaacttgcattgttg |
217 |
Q |
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| T |
23535327 |
cataatttccttgttgagttgccataatgagaagaggactcttcccacttgatggtggaaggttgtacatgaatccctttaatttcaacttgcattgttg |
23535228 |
T |
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| Q |
218 |
gctagcttaaactaccctatgacaagtgtacagaagagtgttgaacatagaattgatttctttaggtgggtatcacatgtagttctggttcaatagacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23535227 |
gctagcttaaactaccctatgacaagtgtacagaagagtgttgaacatagaattgatttctttaggtgggtatcacatgtagttctggttcaatagacca |
23535128 |
T |
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| Q |
318 |
attatatttgatagcgttgtgtgtgggtgtgcctactcatctatgtgaaagatcaactgaannnnnnnntgtcattgacctcctgcacctgtggtcctat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23535127 |
attatatttgatagcgttgtgtgtgggtgtgcctactcatctatgtgaaagatcaactgaa-ccccccctgtcattgacctcctgcacctgtggtcctat |
23535029 |
T |
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