View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_22 (Length: 435)
Name: NF19628_low_22
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 1947906 - 1948308
Alignment:
| Q |
18 |
acaaagggttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttactt |
117 |
Q |
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| T |
1947906 |
acaaagggttagaggatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttactt |
1948005 |
T |
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| Q |
118 |
caaatttatgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948006 |
caaatttatgcaatgcaagaaggtgcaacaaaaagggtagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcga |
1948105 |
T |
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| Q |
218 |
tgttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaat |
317 |
Q |
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| T |
1948106 |
tgttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaat |
1948205 |
T |
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| Q |
318 |
gttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgctt |
417 |
Q |
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| T |
1948206 |
gttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagcattaaagtctccgaaagtgcacatttgctt |
1948305 |
T |
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| Q |
418 |
gat |
420 |
Q |
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||| |
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| T |
1948306 |
gat |
1948308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 1978500 - 1978098
Alignment:
| Q |
18 |
acaaagggttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttactt |
117 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1978500 |
acaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttactcgagttactt |
1978401 |
T |
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| Q |
118 |
caaatttatgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcga |
217 |
Q |
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| T |
1978400 |
caaatttatgcaatgcaagaaggtgaaccaaagagggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaa |
1978301 |
T |
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| Q |
218 |
tgttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaat |
317 |
Q |
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| T |
1978300 |
tgttgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaat |
1978201 |
T |
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| Q |
318 |
gttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgctt |
417 |
Q |
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| T |
1978200 |
gttgattttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaaaagtttccaagcattaaagtctccgaaagtgcacatttgctt |
1978101 |
T |
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| Q |
418 |
gat |
420 |
Q |
| |
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||| |
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| T |
1978100 |
gat |
1978098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 416
Target Start/End: Complemental strand, 1985407 - 1985017
Alignment:
| Q |
26 |
ttagaggatgttaccacaaattcttagatttgaatggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttacttcaaattta |
125 |
Q |
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|||||| ||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||| |||||||||| |||||| |||| |
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| T |
1985407 |
ttagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcctacttgagttccttcaatttta |
1985308 |
T |
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| Q |
126 |
tgcaatgcaagaaggtgcaacaaaaaggatagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgaga |
225 |
Q |
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||| ||||||||| | | ||| || | || |||| || | |||||| ||||| || |||||| ||| || | || | ||| |||||| || ||||| |
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| T |
1985307 |
tgccatgcaagaa---gaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgcaattttgagg |
1985211 |
T |
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| Q |
226 |
gacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattc---tcgtcaaaagaagctgctgatgaaatgttga |
322 |
Q |
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| T |
1985210 |
gatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaaaatgctgatgatgtgttga |
1985111 |
T |
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| Q |
323 |
ttttcatgtttataggtttgtttaaacaaacttcacctttcaagatgattgaagagtttccaagtattaaagtctccgaaagtgcacatttgct |
416 |
Q |
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| T |
1985110 |
tattgatgtgtataaggttgtttaaagagatttcaccctttaagatgtttgaagagtatcctaacattcaagtcttagagtgtgcacatttgct |
1985017 |
T |
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