View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_low_26 (Length: 384)

Name: NF19628_low_26
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_low_26
NF19628_low_26
[»] chr6 (7 HSPs)
chr6 (17-223)||(31472651-31472857)
chr6 (17-223)||(31493834-31494040)
chr6 (17-223)||(31499220-31499426)
chr6 (17-219)||(31513749-31513950)
chr6 (263-372)||(31493625-31493734)
chr6 (263-372)||(31499014-31499123)
chr6 (137-205)||(2868006-2868075)
[»] chr5 (1 HSPs)
chr5 (301-351)||(29294171-29294221)
[»] chr3 (1 HSPs)
chr3 (292-351)||(27003363-27003422)
[»] chr4 (3 HSPs)
chr4 (87-205)||(55584617-55584733)
chr4 (87-205)||(53437454-53437570)
chr4 (87-205)||(53438887-53439003)
[»] chr7 (2 HSPs)
chr7 (304-356)||(33627567-33627619)
chr7 (87-205)||(9953577-9953693)
[»] chr2 (2 HSPs)
chr2 (87-205)||(28634250-28634366)
chr2 (88-205)||(44679395-44679510)
[»] chr1 (1 HSPs)
chr1 (35-111)||(35765228-35765305)
[»] scaffold0144 (1 HSPs)
scaffold0144 (87-205)||(39691-39807)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 31472857 - 31472651
Alignment:
Q  17 cacatttagattataaccgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 116  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31472857 cacatttatattataactgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 31472758  T
Q  117 aattcgacaatatgatgcagtcctcgagttcaacacttgtttttccattttaaatttactaattgcaccatttcgtacacttgcaaaaaatcggtatcgt 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  31472757 aattcgacaatatgacgcagtcctcgagttcaacacttgtttttccgttttaactttactaattgcacgatttcgtacactttcaaaaaatcggtatcgt 31472658  T
Q  217 cttatta 223  Q
    |||||||    
T  31472657 cttatta 31472651  T

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Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 31494040 - 31493834
Alignment:
Q  17 cacatttagattataaccgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31494040 cacatttagattataactgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 31493941  T
Q  117 aattcgacaatatgatgcagtcctcgagttcaacacttgtttttccattttaaatttactaattgcaccatttcgtacacttgcaaaaaatcggtatcgt 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||  |||||||||||||||||||||| ||||||||    
T  31493940 aattcgacaatatgacgcagtcctcgagttcaacacttgtttttccgttttaactttactaattacatgatttcgtacacttgcaaaaaattggtatcgt 31493841  T
Q  217 cttatta 223  Q
    |||||||    
T  31493840 cttatta 31493834  T

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Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 31499426 - 31499220
Alignment:
Q  17 cacatttagattataaccgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31499426 cacatttagattataactgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 31499327  T
Q  117 aattcgacaatatgatgcagtcctcgagttcaacacttgtttttccattttaaatttactaattgcaccatttcgtacacttgcaaaaaatcggtatcgt 216  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||| ||  |||||||||||||||||||||| ||||||||    
T  31499326 aattcgacaatatgacgcggtcctcgagttcaacacttgtttttccgttttaactttactaattacatgatttcgtacacttgcaaaaaattggtatcgt 31499227  T
Q  217 cttatta 223  Q
    |||||||    
T  31499226 cttatta 31499220  T

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Target: chr6; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 31513950 - 31513749
Alignment:
Q  17 cacatttagattataaccgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaattaagttttaaaatatac 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31513950 cacatttagattataactgacttttattcaattttcgtagtagcaaaaattacaaacaacacactcgtatctttttgttcaataaagttttaaaatatac 31513851  T
Q  117 aattcgacaatatgatgcagtcctcgagttcaacacttgtttttccattttaaatttactaattgcaccatttcgtacacttgcaaaaaatcggtatcgt 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||  || |||| ||||||||||| |||||||||||| |    
T  31513850 aattcgacaatatgacgcagtcctcgagttcaacacttgtttttccgttttaactttactaattatacgattttgtacacttgca-aaaatcggtatcat 31513752  T
Q  217 ctt 219  Q
    |||    
T  31513751 ctt 31513749  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 31493734 - 31493625
Alignment:
Q  263 gttcaagtcccacctatgccaaattttaaaattttgtaaaagttaatttggatgtgcggtcaaatgctgttgactcgcccggttcacactaacccacaat 362  Q
    |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  31493734 gttcaagtcccacctatgccaaatttaaaatttttttaaaagttaatttggatgtgcggtcaaatgctgttgacttgcccggttcacattaacccacaat 31493635  T
Q  363 gtcacaggtt 372  Q
    ||||| ||||    
T  31493634 gtcaccggtt 31493625  T

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Target: chr6; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 31499123 - 31499014
Alignment:
Q  263 gttcaagtcccacctatgccaaattttaaaattttgtaaaagttaatttggatgtgcggtcaaatgctgttgactcgcccggttcacactaacccacaat 362  Q
    |||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31499123 gttcaagtcccacctatgccaaatttaaaattcttttaaaagttaatttggatgtgcggtcaaatgctgttgacttgcccggttcacactaacccacaat 31499024  T
Q  363 gtcacaggtt 372  Q
    ||||| ||||    
T  31499023 gtcaccggtt 31499014  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 2868006 - 2868075
Alignment:
Q  137 tcctcgagttcaacacttgttttt-ccattttaaatttactaattgcaccatttcgtacacttgcaaaaa 205  Q
    ||||||||||| ||||||| | || || |||||| ||||||| |||||| ||||||||||||||| ||||    
T  2868006 tcctcgagttcgacacttggtcttaccgttttaattttactacttgcacgatttcgtacacttgcgaaaa 2868075  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 29294171 - 29294221
Alignment:
Q  301 aaagttaatttggatgtgcggtcaaatgctgttgactcgcccggttcacac 351  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29294171 aaagttaatttggatgtgcggtcaaaggctgttgactcgcccggttcacac 29294221  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 27003363 - 27003422
Alignment:
Q  292 aattttgtaaaagttaatttggatgtgcggtcaaatgctgttgactcgcccggttcacac 351  Q
    |||||| | |||||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  27003363 aattttttgaaagttaatttggatgcgcggtcaaaggctgttgactcgtccggttcacac 27003422  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 55584733 - 55584617
Alignment:
Q  87 ctttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacacttgttttt-ccattttaaatttactaattgcacc 185  Q
    ||||||||||||||||||| ||||   ||| |||||||| ||| | ||  ||||||||||| ||||| ||| || || |||||| ||||||| ||||||     
T  55584733 ctttttgttcaattaagttataaa---tactattcgacagtataacgcgatcctcgagttcgacactcgttcttaccgttttaattttactacttgcacg 55584637  T
Q  186 atttcgtacacttgcaaaaa 205  Q
    ||||||||||||||| ||||    
T  55584636 atttcgtacacttgcgaaaa 55584617  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 53437454 - 53437570
Alignment:
Q  87 ctttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacact-tgtttttccattttaaatttactaattgcacc 185  Q
    ||||||||||||||||||| |||   |||| |||||||| ||| | ||  ||||||||||| |||||  || || || |||||| ||||||| ||||||     
T  53437454 ctttttgttcaattaagttataa---atactattcgacagtataacgcgatcctcgagttcgacactcggtcttaccgttttaattttactacttgcacg 53437550  T
Q  186 atttcgtacacttgcaaaaa 205  Q
    |||| |||||||||| ||||    
T  53437551 attttgtacacttgcgaaaa 53437570  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 53438887 - 53439003
Alignment:
Q  87 ctttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacact-tgtttttccattttaaatttactaattgcacc 185  Q
    ||||||||||||||||||| |||   |||| |||||||| ||| | ||  ||||||||||| |||||  || || || |||||| ||||||| ||||||     
T  53438887 ctttttgttcaattaagttataa---atactattcgacagtataacgcgatcctcgagttcgacactcggtcttaccgttttaattttactacttgcacg 53438983  T
Q  186 atttcgtacacttgcaaaaa 205  Q
    |||| |||||||||| ||||    
T  53438984 attttgtacacttgcgaaaa 53439003  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 33627619 - 33627567
Alignment:
Q  304 gttaatttggatgtgcggtcaaatgctgttgactcgcccggttcacactaacc 356  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||| ||||    
T  33627619 gttaatttggatgcgcggtcaaaggccgttgactcgcccggttcacacaaacc 33627567  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 9953693 - 9953577
Alignment:
Q  87 ctttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacacttgttttt-ccattttaaatttactaattgcacc 185  Q
    ||||||||||||||||||| ||||   ||  |||||||| ||| | ||  ||||||||||| ||||| | | || || |||||| ||||||| ||||||     
T  9953693 ctttttgttcaattaagttataaa---tatcattcgacagtataacgcgatcctcgagttcgacactcggtcttaccgttttaattttactacttgcacg 9953597  T
Q  186 atttcgtacacttgcaaaaa 205  Q
    ||||||||||||||| ||||    
T  9953596 atttcgtacacttgcgaaaa 9953577  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 28634250 - 28634366
Alignment:
Q  87 ctttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacacttgttttt-ccattttaaatttactaattgcacc 185  Q
    ||||||||||||||||||| ||||   ||  |||||||||||| | ||  ||||||||||| ||||| | | || || |||||| ||||||| ||||||     
T  28634250 ctttttgttcaattaagttataaa---tattattcgacaatataacgcgatcctcgagttcgacactcggtcttaccgttttaattttactacttgcacg 28634346  T
Q  186 atttcgtacacttgcaaaaa 205  Q
    ||||||||||||||| ||||    
T  28634347 atttcgtacacttgcgaaaa 28634366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 44679510 - 44679395
Alignment:
Q  88 tttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacacttgttttt-ccattttaaatttactaattgcacca 186  Q
    |||||||||||||||||| ||||   ||| |||||||| ||| | ||  ||||||||||| ||||| | | || || |||||| ||||||| |||||| |    
T  44679510 tttttgttcaattaagttataaa---tactattcgacagtataacgcgatcctcgagttcgacactcggtcttaccgttttaattttactacttgcacga 44679414  T
Q  187 tttcgtacacttgcaaaaa 205  Q
    |||||||||||||| ||||    
T  44679413 tttcgtacacttgcgaaaa 44679395  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 35765305 - 35765228
Alignment:
Q  35 gacttttattcaattttcgtagtagcaaaaa-ttacaaacaacacactcgtatctttttgttcaattaagttttaaaa 111  Q
    ||||||||||||| |||||| || | ||||| |||||||||||| ||||||| |||||| ||||| |||||| |||||    
T  35765305 gacttttattcaagtttcgttgttgaaaaaaattacaaacaacatactcgtacctttttcttcaactaagttctaaaa 35765228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 39807 - 39691
Alignment:
Q  87 ctttttgttcaattaagttttaaaatatacaattcgacaatatgatgcagtcctcgagttcaacact-tgtttttccattttaaatttactaattgcacc 185  Q
    ||||||||||||||||||| |||   |||| |||||| | ||| | ||| ||||||||||| |||||  || || || |||||| ||||||| ||||||     
T  39807 ctttttgttcaattaagttataa---atactattcgagagtataacgcaatcctcgagttcgacactcggtcttaccgttttaattttactacttgcacg 39711  T
Q  186 atttcgtacacttgcaaaaa 205  Q
    |||||||||| |||| ||||    
T  39710 atttcgtacatttgcgaaaa 39691  T

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