View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_low_27 (Length: 380)

Name: NF19628_low_27
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_low_27
NF19628_low_27
[»] chr8 (3 HSPs)
chr8 (195-268)||(29212250-29212323)
chr8 (323-375)||(29212353-29212405)
chr8 (116-160)||(34845584-34845631)
[»] chr4 (1 HSPs)
chr4 (116-152)||(26040840-26040876)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 29212250 - 29212323
Alignment:
Q  195 aaaaagtgttgtaccaaggtagtaaagtgaataaatgtagtacatacattcactgacactggaacactagaaaa 268  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29212250 aaaaagtattgtaccaaagtagtaaagtgaataaatgtagtacatacattcactgacactggaacactagaaaa 29212323  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 29212353 - 29212405
Alignment:
Q  323 caaaacaaattattatgttgtgaacatgttataataaacttgcctttgcttct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29212353 caaaacaaattattatgttgtgaacatgttataataaacttgcccttgcttct 29212405  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 34845584 - 34845631
Alignment:
Q  116 cgaaaatgacatatattacaggg---taaaagactattaatcctaaaa 160  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||    
T  34845584 cgaaaatgacatatattacagggaattaaaacactattaatcctaaaa 34845631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 26040840 - 26040876
Alignment:
Q  116 cgaaaatgacatatattacagggtaaaagactattaa 152  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  26040840 cgaaaatgacctatattacagggtaaaacactattaa 26040876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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