View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_28 (Length: 379)
Name: NF19628_low_28
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 2445081 - 2444729
Alignment:
| Q |
14 |
atacatatgaatcaacgtattcaacacatgaacatcctcttcaaatccaaacttgacaacacagccatgaacacatttccctaacctcaaactcccaata |
113 |
Q |
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| T |
2445081 |
atacatatgaatcaacgtattcaacacatgaacatcctcttcaaatccaaacttgacaacacagccatgaacacatttccctaacctcaaactcccaata |
2444982 |
T |
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| Q |
114 |
ccagcacaccctttaagaacaaacggaaaggtgaatttattgggtgtaacaccgtaacgtagcattgttctgtaaaagaggaaggaatttgatttagaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2444981 |
ccagcacaccctttaagaacaaacggaaaggtgaatttattgggtgtaacaccgtaacgtagcattgttctgtaaaagaggaaggaatttgatttagaat |
2444882 |
T |
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| Q |
214 |
cgcgtgtttgggaataagcgcggatgagggtgttgaagaggaaggcatcgtaggagggggtgggtgtagaagtagtatgggaaggtgggaataagaatga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2444881 |
cgcgtgtttgggaataagcgcggatgagggtgttgaagaggaaggcatcgtaggagggggtgggtgtagaagtagtatgggaaggtgggaataagaatga |
2444782 |
T |
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| Q |
314 |
ggtggcgtagtggattgagttgaggttagaggaagttgaagtgaatttagtga |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2444781 |
ggtggcgtagtggattgagttgaggttagaggaagttgaagtgaatttagtga |
2444729 |
T |
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