View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_32 (Length: 361)
Name: NF19628_low_32
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 26765635 - 26765308
Alignment:
| Q |
18 |
aacaataatcttgctaattagtggctgatccatagcaagtggaaatgttaaaaaaggaaccccagaaaaaataccttcaataacagaattccaaccacaa |
117 |
Q |
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| T |
26765635 |
aacaataatcttactaattagtggttgatccatagcaagtggaaatgttaaaaaaggaaccccagaaaaaacaccttcaataacagaattccaaccacaa |
26765536 |
T |
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| Q |
118 |
tgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctat |
217 |
Q |
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| T |
26765535 |
tgtgtccaataaccacctatagaaggatgtgacaataccgtcaattggtcacaccatggcacaacaaaccccattttcccacacatatgtttcaatctat |
26765436 |
T |
|
| Q |
218 |
gagtctcgtctcgtgttacccacaagaatcgaacaccactatcatgcaatgcagatgcaatttcatccatttgtgttcttgaaacggatagataacttcc |
317 |
Q |
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|||||||||| || |||||||||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
26765435 |
gagtctcgtcacgcgttacccacaagaaccgaacaccactatcgtgcaatgcagctgcaatatcatccatttgtgttcttgaaaccgatagataacttcc |
26765336 |
T |
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| Q |
318 |
atatgaaatgtacaaaacagaaccatta |
345 |
Q |
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| T |
26765335 |
atatgaaatgtacaaaacagaaccatta |
26765308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 343
Target Start/End: Complemental strand, 26785733 - 26785412
Alignment:
| Q |
22 |
ataatcttgctaattagtggctgatccatagcaagtggaaatgttaaaaaaggaaccccagaaaaaataccttcaataacagaattccaaccacaatgtg |
121 |
Q |
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| T |
26785733 |
ataatcttactaattagtggttgatccaaaacaagtggaaatgttaaaaaaggaaccccagaaaaaacaccttcaataactgaattccaaccacaatgtg |
26785634 |
T |
|
| Q |
122 |
tccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagt |
221 |
Q |
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| T |
26785633 |
tccaataaccacctatagaaggatgtaacaataccctcaattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagt |
26785534 |
T |
|
| Q |
222 |
ctcgtctcgtgttacccacaagaatcgaacaccactatcatgcaatgcagatgcaatttcatccatttgtgttcttgaaacggatagataacttccatat |
321 |
Q |
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|||||| || | |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
26785533 |
ctcgtcgcgcgctacccacaagaaccgaacaccactatcctgcaatgcagctgcaatttcatccatttgtgttcttgaaaccgatagataactgccatat |
26785434 |
T |
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| Q |
322 |
gaaatgtacaaaacagaaccat |
343 |
Q |
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| T |
26785433 |
gaaatgtacaaaacggaaccat |
26785412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 32075099 - 32075170
Alignment:
| Q |
103 |
gaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccat |
174 |
Q |
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| T |
32075099 |
gaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccat |
32075170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 31005902 - 31005831
Alignment:
| Q |
103 |
gaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccat |
174 |
Q |
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||||||||||||||||||| |||| | ||||| | ||||| ||||||||| ||||||||||||| ||||||| |
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| T |
31005902 |
gaattccaaccacaatgtgaccaaaatccaccaatagaagaatgtgacaacactctcaattggttacaccat |
31005831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 31010568 - 31010461
Alignment:
| Q |
103 |
gaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccatgtcacaacaaaccccattttcccacaca |
202 |
Q |
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|||||||| |||||||||| |||| ||||||||| || | ||| ||| |||||||||||||||||||||| || ||||||||| ||| |||||| | |
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| T |
31010568 |
gaattccacccacaatgtgaccaaaaaccacctatagcactatgcatcaacactctcaattggtcacaccatggcaaaacaaaccctttttccccacaaa |
31010469 |
T |
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| Q |
203 |
tatgtttc |
210 |
Q |
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||| |||| |
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| T |
31010468 |
tatctttc |
31010461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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