View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_35 (Length: 343)
Name: NF19628_low_35
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 3601735 - 3602047
Alignment:
| Q |
17 |
gtttctagaaatctattttggacattttgagaattacattcacggattggggaatgatagttataacatttatcaaccaattatcagactggactttgat |
116 |
Q |
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| T |
3601735 |
gtttctagaaaattattttggacattttgagaattacgttcatggattgggtaatgatagttataacatttatcaaccaagtatcagactggactttgat |
3601834 |
T |
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| Q |
117 |
tatccaaacaaatggcttggagtattatgtttttcaaataaatatttctttcgtaactaaacttttgaatatgaattagccataagtgggcttctcatca |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3601835 |
tatccaaacaaatggcttggagtattatgcttttcaaataaatatttctttcgtgactaaacttttgaatatgaattagccataagtgggcttctcatca |
3601934 |
T |
|
| Q |
217 |
atataaattttatgttccacaatgcaatttcttttgtaattttaatgttcggcggaaactacaacaaagtacttttggtttcgaggaagttttacttcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3601935 |
atataaattttatgttccacaatgcaatttcttttgtaattttaatgttcggcggaaactacaacaaagtacttttggtttcgaggaagttttacttcta |
3602034 |
T |
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| Q |
317 |
cagtgtctcatct |
329 |
Q |
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||| ||||||||| |
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| T |
3602035 |
cagcgtctcatct |
3602047 |
T |
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