View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_low_4 (Length: 692)

Name: NF19628_low_4
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_low_4
NF19628_low_4
[»] chr7 (3 HSPs)
chr7 (1-674)||(7430056-7430729)
chr7 (579-638)||(40362011-40362070)
chr7 (573-649)||(41850633-41850709)
[»] chr4 (8 HSPs)
chr4 (579-644)||(26066411-26066476)
chr4 (579-638)||(20114107-20114166)
chr4 (581-618)||(25445191-25445228)
chr4 (571-628)||(30206526-30206583)
chr4 (572-649)||(45828449-45828526)
chr4 (579-638)||(22235304-22235363)
chr4 (571-649)||(43117887-43117965)
chr4 (573-649)||(53225679-53225755)
[»] chr6 (5 HSPs)
chr6 (571-638)||(8920482-8920549)
chr6 (563-635)||(4981005-4981080)
chr6 (580-649)||(7649836-7649905)
chr6 (571-636)||(24265504-24265569)
chr6 (571-608)||(32974257-32974294)
[»] chr1 (5 HSPs)
chr1 (581-643)||(101519-101581)
chr1 (568-604)||(26533665-26533701)
chr1 (581-643)||(101519-101581)
chr1 (573-638)||(39514982-39515047)
chr1 (580-636)||(37921703-37921759)
[»] chr2 (1 HSPs)
chr2 (573-649)||(41153146-41153222)
[»] chr8 (8 HSPs)
chr8 (579-638)||(10396833-10396892)
chr8 (580-649)||(27976764-27976833)
chr8 (580-649)||(28034033-28034102)
chr8 (571-644)||(10107318-10107387)
chr8 (568-604)||(17855862-17855898)
chr8 (572-644)||(27789313-27789385)
chr8 (580-644)||(27789321-27789385)
chr8 (568-604)||(33058608-33058644)
[»] chr3 (4 HSPs)
chr3 (568-611)||(17103716-17103759)
chr3 (579-645)||(29290819-29290885)
chr3 (590-643)||(19674624-19674677)
chr3 (579-643)||(32711245-32711309)
[»] scaffold0025 (1 HSPs)
scaffold0025 (557-643)||(65970-66055)
[»] chr5 (1 HSPs)
chr5 (573-646)||(12569172-12569245)


Alignment Details
Target: chr7 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 7430729 - 7430056
Alignment:
Q  1 atcattcagtccagttcttcctcaaatctcaaccatcacattcatatttcatccaccaccacgcgctactcaattctcacgcgcctccgatcaaaaccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7430729 atcattcagtccagttcttcctcaaatctcaaccatcacattcacatttcctccaccaccacgcgctactcaattctcacgcgcctccgattaaaaccaa 7430630  T
Q  101 tgcgccaccactgatgcgcatggagataacaccaacaaccttcgcatcccacagttactccgaccttccctccgccgcatccatgccgactcgtcctatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7430629 tgcgccaccactgatgcgcatggagataacaccaacaaccttcgcatcccacagttactccgaccttccctccgccgcatccatgccgactcgtcctatc 7430530  T
Q  201 agagttatccctatgcaacatccaaaccttacgtctccatcttcttcgaattcgttacctccgaatgtcgcgattacgcagttcgcgtcgaagcttcgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7430529 agagttatccctatgcaacatccaaaccttacgtctccatcttcttcgaattcgttacctccgaatgtcgcgattacgcagttcgcgtcgaagcttcgag 7430430  T
Q  301 gaatgacgtggcttgaatggattgagttcttgattccttgttatcgttggattcggatatataaatggcgtgagtatcttcaggttgatcttatggctgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7430429 gaatgacgtggcttgaatggattgagttcttgattccttgttatcgttggattcggatatataaatggcgtgagtatcttcaggttgatcttatggctgg 7430330  T
Q  401 aatcaccgttggtgttatgctcgttcctcaggtaacgtttcttctccgtttcgttgctgagaaaatgatagaaaaatgtttccattttcg--nnnnnnnn 498  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  7430329 aatcaccgttggtgttatgctcgttcctcaggtaacgcttcttctccgtttcgttgctgagaaaatgatagaaaaatgtttccattttcgtttttttttt 7430230  T
Q  499 ncctttcaatagtttgtttatttagcatgtacacacttctcatcaaagatgtattaggtaaaaaacaaa--ttgttttttctgattcattaaataactga 596  Q
     ||||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  7430229 tcctttcaata----gtttatttagcatgtacacacttctgatcaaagatgtattaggtaaaaaaaaaaatttgttttttctgattcattaaataactga 7430134  T
Q  597 tgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaacaaaaaagttttgcatgtatatgaa 674  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7430133 tgtatctggtctatattgtaaaccaaatacataaattattcactgaatttagacaaaaaagttttgcatgtatatgaa 7430056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 638
Target Start/End: Original strand, 40362011 - 40362070
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattca 638  Q
    |||||||| ||||| |||||||| || ||||||||||| ||||||||||| ||| |||||    
T  40362011 gattcattgaataattgatgtatttgatttatattgtagaccaaatacattaatcattca 40362070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 649
Target Start/End: Complemental strand, 41850709 - 41850633
Alignment:
Q  573 ttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    |||| |||||||||  |||| |||||||| || | |||||| || ||||||||||| ||||||||| ||||| ||||    
T  41850709 ttttttgattcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaatgaatctaaa 41850633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 579 - 644
Target Start/End: Complemental strand, 26066476 - 26066411
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaat 644  Q
    |||||||||||||||||||||||||||| |||||| || |||  |||||| ||||||||| |||||    
T  26066476 gattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaat 26066411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 638
Target Start/End: Complemental strand, 20114166 - 20114107
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattca 638  Q
    |||| ||| ||||||| |||||| |||| |||||| ||||||||||||||||||||||||    
T  20114166 gattaattgaataactaatgtatatggtctatattctaaaccaaatacataaattattca 20114107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 25445191 - 25445228
Alignment:
Q  581 ttcattaaataactgatgtatctggtttatattgtaaa 618  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  25445191 ttcattaaataactgatgtatctggtttatattataaa 25445228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 30206583 - 30206526
Alignment:
Q  571 ttttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacat 628  Q
    ||||||| |||||||| ||||| |||||||||||||||||| | || |||||||||||    
T  30206583 ttttttcagattcattgaataattgatgtatctggtttataatatagaccaaatacat 30206526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 649
Target Start/End: Original strand, 45828449 - 45828526
Alignment:
Q  572 tttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    ||||| |||||| ||| |||| |||||||| ||||||||||| || ||||||||||| ||||| ||| ||||| ||||    
T  45828449 tttttttgattctttacataaatgatgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaa 45828526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 638
Target Start/End: Complemental strand, 22235363 - 22235304
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattca 638  Q
    |||||||| ||||||||||||||||||||||||||  | | |||||| || |||||||||    
T  22235363 gattcattgaataactgatgtatctggtttatattaaagatcaaatatatcaattattca 22235304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 649
Target Start/End: Original strand, 43117887 - 43117965
Alignment:
Q  571 ttttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    |||||| ||||| |||  |||| |||||||| |||| |||||| || ||||||||||| ||||||||| ||||| ||||    
T  43117887 ttttttttgatttattgcataaatgatgtatttggtctatattttataccaaatacatcaattattcaatgaatgtaaa 43117965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 649
Target Start/End: Original strand, 53225679 - 53225755
Alignment:
Q  573 ttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    |||| |||||||||  |||| |||||||| |||| || ||| || ||||||||||| ||||||||| ||||| ||||    
T  53225679 ttttttgattcattgcataaatgatgtatttggtctacattctataccaaatacattaattattcaatgaatctaaa 53225755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 638
Target Start/End: Original strand, 8920482 - 8920549
Alignment:
Q  571 ttttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattca 638  Q
    |||||||||||||||| ||||||||||||| || |  |||||| |||| ||||||||| |||||||||    
T  8920482 ttttttctgattcattgaataactgatgtaccttgactatattataaatcaaatacatcaattattca 8920549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 635
Target Start/End: Original strand, 4981005 - 4981080
Alignment:
Q  563 acaaattgttttttct---gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattat 635  Q
    |||| |||||||||||   |||| ||| |||||||||||||| | ||||||||||||||||||| |||| ||||||    
T  4981005 acaatttgttttttctccagatttatttaataactgatgtatttagtttatattgtaaaccaaaaacattaattat 4981080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 649
Target Start/End: Complemental strand, 7649905 - 7649836
Alignment:
Q  580 attcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    ||||||| ||||| |||| ||| |||| |||||| || ||||||||||| ||||||||| ||||| ||||    
T  7649905 attcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaa 7649836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 636
Target Start/End: Original strand, 24265504 - 24265569
Alignment:
Q  571 ttttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattatt 636  Q
    ||||||| ||||||||||||||||||||||| |||  |||||| |||  || |||||| |||||||    
T  24265504 ttttttcagattcattaaataactgatgtatatggactatattataattcagatacatcaattatt 24265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Complemental strand, 32974294 - 32974257
Alignment:
Q  571 ttttttctgattcattaaataactgatgtatctggttt 608  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  32974294 ttttttcagattcattaaataactgatatatctggttt 32974257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 581 - 643
Target Start/End: Complemental strand, 101581 - 101519
Alignment:
Q  581 ttcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaa 643  Q
    |||||| ||||| | |||||||||||||| ||||||||||| |||||| ||||||||| ||||    
T  101581 ttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaa 101519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 604
Target Start/End: Complemental strand, 26533701 - 26533665
Alignment:
Q  568 ttgttttttctgattcattaaataactgatgtatctg 604  Q
    |||||||||| ||||||||||||||||||||||||||    
T  26533701 ttgttttttcagattcattaaataactgatgtatctg 26533665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 643
Target Start/End: Original strand, 101519 - 101581
Alignment:
Q  581 ttcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaa 643  Q
    |||||| ||||| | |||||||||||||| | ||||||||| |||||| ||||||||| ||||    
T  101519 ttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattattcaatgaa 101581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 638
Target Start/End: Complemental strand, 39515047 - 39514982
Alignment:
Q  573 ttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattca 638  Q
    ||||| ||||||||||||||||  |||||||| | |||||| ||||||| |||||| | |||||||    
T  39515047 ttttcagattcattaaataactattgtatctgatatatattataaaccagatacattagttattca 39514982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 37921759 - 37921703
Alignment:
Q  580 attcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattatt 636  Q
    ||||||||||||||| |||||| |||  |||||| ||||| |||||||| |||||||    
T  37921759 attcattaaataacttatgtatttggactatattataaactaaatacatcaattatt 37921703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 649
Target Start/End: Original strand, 41153146 - 41153222
Alignment:
Q  573 ttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    |||| |||||||||  |||| |||||||| |||| |||||| |||||||||||||| ||||| ||| ||||| ||||    
T  41153146 ttttttgattcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaa 41153222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 638
Target Start/End: Original strand, 10396833 - 10396892
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattca 638  Q
    |||| ||| ||||||| |||||| |||| |||||| ||||||||||||||||||| ||||    
T  10396833 gattaattgaataactaatgtatatggtctatattctaaaccaaatacataaattgttca 10396892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 649
Target Start/End: Original strand, 27976764 - 27976833
Alignment:
Q  580 attcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    ||||||||||||| | ||| ||||||| |||| |||| |||| |||||| ||||||||| ||||| ||||    
T  27976764 attcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatctaaa 27976833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 649
Target Start/End: Original strand, 28034033 - 28034102
Alignment:
Q  580 attcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatttaaa 649  Q
    ||||||||||||| | ||| ||||||| |||| |||| |||| |||||| ||||||||| ||||| ||||    
T  28034033 attcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatctaaa 28034102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 571 - 644
Target Start/End: Complemental strand, 10107387 - 10107318
Alignment:
Q  571 ttttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaat 644  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||    |||| |||||| ||||||||| |||||    
T  10107387 ttttttcagtttcattgaataactgatgtatctggtctatatt----accatatacattaattattcaatgaat 10107318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 604
Target Start/End: Original strand, 17855862 - 17855898
Alignment:
Q  568 ttgttttttctgattcattaaataactgatgtatctg 604  Q
    |||||||||| |||||||||||||| |||||||||||    
T  17855862 ttgttttttcagattcattaaataattgatgtatctg 17855898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 644
Target Start/End: Original strand, 27789313 - 27789385
Alignment:
Q  572 tttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaat 644  Q
    ||||| ||||||||| ||||| ||||||||||||| |||| | |  ||||||||||| | ||||||| |||||    
T  27789313 tttttttgattcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaatgaat 27789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 644
Target Start/End: Complemental strand, 27789385 - 27789321
Alignment:
Q  580 attcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaat 644  Q
    ||||||| |||||||||||||| ||||  ||||| || |||| |||||| ||||||||| |||||    
T  27789385 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 27789321  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 604
Target Start/End: Original strand, 33058608 - 33058644
Alignment:
Q  568 ttgttttttctgattcattaaataactgatgtatctg 604  Q
    |||||||||| |||||||||||||| |||||||||||    
T  33058608 ttgttttttcagattcattaaataattgatgtatctg 33058644  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 611
Target Start/End: Complemental strand, 17103759 - 17103716
Alignment:
Q  568 ttgttttttctgattcattaaataactgatgtatctggtttata 611  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||    
T  17103759 ttgtcttttcagattcattaaataactgatgtatctggattata 17103716  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 29290819 - 29290885
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaatt 645  Q
    |||||||| || |||||||||||||| | |||||| || || |||||||||| ||||||| ||||||    
T  29290819 gattcattgaacaactgatgtatctgatctatattatagactaaatacataagttattcaatgaatt 29290885  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 643
Target Start/End: Complemental strand, 19674677 - 19674624
Alignment:
Q  590 taactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaa 643  Q
    |||||||||||||||| ||||||| || ||||||||||  ||||||||| ||||    
T  19674677 taactgatgtatctgggttatattatagaccaaatacaacaattattcaatgaa 19674624  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 32711309 - 32711245
Alignment:
Q  579 gattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaa 643  Q
    |||||||| ||||| ||||||||||||| |||| | ||  |||||||||| ||||||||| ||||    
T  32711309 gattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 643
Target Start/End: Original strand, 65970 - 66055
Alignment:
Q  557 taaaaaacaaattgttttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaa 643  Q
    |||||||||| ||| |||||  |||||||| || || | |||||||| || |||||| |||||| ||||||||||||||||| ||||    
T  65970 taaaaaacaa-ttgattttttagattcattgaaaaattcatgtatctagtctatattttaaaccgaatacataaattattcaatgaa 66055  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 646
Target Start/End: Original strand, 12569172 - 12569245
Alignment:
Q  573 ttttctgattcattaaataactgatgtatctggtttatattgtaaaccaaatacataaattattcactgaattt 646  Q
    ||||| ||||||||  ||||||||||||||  || |||| | ||| |||||||||| ||||||||| |||||||    
T  12569172 ttttcagattcattttataactgatgtatccagtctatactataacccaaatacatcaattattcattgaattt 12569245  T

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