View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_40 (Length: 306)
Name: NF19628_low_40
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 36366536 - 36366746
Alignment:
| Q |
37 |
taacatcttgtgaatgaagtaatataaatgaagaatcttgaacagaggaaatatgacctcattagtcattgggcttgttgctttgtaagagaagcagttt |
136 |
Q |
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| T |
36366536 |
taacatcttgtgaaagaaataatataaatgaagaatctagaacagaggaaatatgacctcattagtcattgggcctgttgctttgtgagagaagcagttt |
36366635 |
T |
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| Q |
137 |
gttcattttataactataaaaggctggctttaacttgagaattagtcgatgtgggttatagac--nnnnnnnnccctacagaaacgctttatgccaatgc |
234 |
Q |
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| T |
36366636 |
gttcattttataactataaaaggctggctttaacttgagaattagtcgatgtgggttatagacaaaaaaaaaaccctacagaaacgctttatgccaatgc |
36366735 |
T |
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| Q |
235 |
ctctctacaaa |
245 |
Q |
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| T |
36366736 |
ctctctacaaa |
36366746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 36385783 - 36385891
Alignment:
| Q |
82 |
aggaaatatgacctcattagtcattgggcttgttgctttgtaagagaagcagtttgttcattttataactataaaaggctggctttaacttgagaattag |
181 |
Q |
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|||||||||||||||||| || |||||||||||||||| ||| ||||||| | ||||||||||||| | |||| ||||||||||||||| ||||||| |
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| T |
36385783 |
aggaaatatgacctcattcatcgttgggcttgttgctttataatagaagcatcattttcattttataaccaaaaaaagctggctttaacttgtgaattag |
36385882 |
T |
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| Q |
182 |
tcgatgtgg |
190 |
Q |
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| T |
36385883 |
tcgatgtgg |
36385891 |
T |
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