View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_44 (Length: 285)
Name: NF19628_low_44
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 43257633 - 43257362
Alignment:
| Q |
1 |
tccaaagaatttatctccacatccagcaacaagcttgatttgaaggccatatttctctgtttctgtcttcttgatttgatataacagccaggcacaaaca |
100 |
Q |
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| T |
43257633 |
tccaaagaatttatctccacatccagcaacaagcttgatttgaaggccatatttctctatttctgtcttcttgatttgatataacagccaggcacaaaca |
43257534 |
T |
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| Q |
101 |
gccaaaattagcatcatcttcaatacctgttttacgttagacccttttggtttttggtaccttccaaaagattgatactccattcttctgcattaattca |
200 |
Q |
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| T |
43257533 |
gccaaaattagcatcatcttcaatacctgttttacgttagacccttttggtttttggtaccttccaaaagattgatactccattcttctgcattaattca |
43257434 |
T |
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| Q |
201 |
acatgttgcatggatcaaataaacattcagaggattacgaagtcaagtgagtaatttaacatgttgattctg |
272 |
Q |
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| T |
43257433 |
acatgttgcatggatcaaataaacattcagaggattacgaagtcaagtgagtaatttaacatgttgattctg |
43257362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 43255434 - 43255299
Alignment:
| Q |
58 |
tgtttctgtcttcttgatttgatataacagccaggcacaaacagccaaaattagcatcatcttcaatacctgttttacgttagacccttttggtttttgg |
157 |
Q |
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||||||||| | ||||| |||||||||| |||| |||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
43255434 |
tgtttctgtgtgattgatctgatataacaaccagacacaaatagccaaaactatcatcaacttcaatacctgttttatgttagacccttttggtttttgg |
43255335 |
T |
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| Q |
158 |
taccttccaaaagattgatactccattcttctgcat |
193 |
Q |
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| T |
43255334 |
tatcttccaaaagattgatactccatttctctgcat |
43255299 |
T |
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