View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_45 (Length: 284)
Name: NF19628_low_45
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 5399880 - 5399635
Alignment:
| Q |
21 |
tgtgattgatggtatatatatagcttactatgtatctcttttttcaggaacgtttcatatcacgaagctcatatctaaaacgccacctaacatccctctc |
120 |
Q |
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| T |
5399880 |
tgtgattgatggtatatatatagcttactatgtatctcttttttcaggaacgtttcatatcacgaagctcatatctaaaacgccacctaacatccctctc |
5399781 |
T |
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| Q |
121 |
cgacttcacactctccccaccattaaacataacggcttcaacattcacaaccgttgcagaattttgttacaaccgtaaaatccatttaacaccaacaaac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399780 |
cgacttcacactctccccaccattaaacataacggcttcatcattcacaaccgttgcagaattttgttacaaccgtaaaatccatttaacaccaacaaac |
5399681 |
T |
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| Q |
221 |
attgcagccgttataacggcagcagagttactaggaatgaaagaag |
266 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5399680 |
attgcagccgttataacgacagcagagttactaggaatgaaagaag |
5399635 |
T |
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