View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_46 (Length: 278)
Name: NF19628_low_46
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4888067 - 4888329
Alignment:
| Q |
1 |
aaaatatgcaagaatgtggggggaaaaaatccgttgcagaaaagaa-taaaatttatacactagatgacacaggtataaaacactgaatagcttaagttt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4888067 |
aaaatatgcaagaatgtggggggaaaaaatccgttgcagaaaagaaataaattttatacactagatgacacaggtataaaacactgaatagcttaagttt |
4888166 |
T |
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| Q |
100 |
tacggagagttgactctaataaatgttaggagnnnnnnnttgatttcataaatgattaagtaccctttttctaacataaaactataaaatttacttaatg |
199 |
Q |
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| T |
4888167 |
tacggagagttgactctaataaatattaggagaaaaaaattgatttcataaatgattaagtaccctttttctaacataaaactataaaatttacttaatg |
4888266 |
T |
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| Q |
200 |
aaagctcaagctgaacatgcaaaccaatggattactacactacaccattcatgatataaacaa |
262 |
Q |
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| T |
4888267 |
aaagctcaagctgaacatgcaaaccaatggattactacactacaccattcatgatataaacaa |
4888329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 4683234 - 4683171
Alignment:
| Q |
56 |
tacactagatgacacaggtataaaacactgaatagcttaagttttacggagagttgactctaat |
119 |
Q |
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|||||||||||||||| | ||||||||| |||||| |||||||| ||||||| ||||||||| |
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| T |
4683234 |
tacactagatgacacaagaataaaacacaatatagctaaagttttatggagagtcgactctaat |
4683171 |
T |
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