View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_50 (Length: 259)
Name: NF19628_low_50
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 23171290 - 23171509
Alignment:
| Q |
21 |
gatcgttgactaatcaattatatggagtgtatataaagggtaaagctgtacaagaaaataagactcaaaagccaacaaaatatggggaatttttgctctg |
120 |
Q |
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| T |
23171290 |
gatcgttgacta-taaattatatggagtatatataaagggtaaagctgtacaagaaaataagactcaaaagccaacaaaatatggggaatttttgctctg |
23171388 |
T |
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| Q |
121 |
gacatgaaaagagaagagatgataaaataaacaagaaaaatggtggatttaaagccatgcatggtggtaacatggtttttatgactgatgctaatcatgg |
220 |
Q |
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| T |
23171389 |
gacatgaaaagagaagagatgataaaataaacaagaaaaatggtggatttaaagccatgcaaggtggtaacatggtttttatgactgatgctaatcctgg |
23171488 |
T |
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| Q |
221 |
agggggtcatcatggacatga |
241 |
Q |
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| T |
23171489 |
agggggtcatcatggacatga |
23171509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 23178731 - 23178787
Alignment:
| Q |
47 |
gtgtatataaagggtaaagctgtacaagaaaataagactcaaaagccaacaaaatat |
103 |
Q |
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| T |
23178731 |
gtgtatataaagggtaaagttgtacaggaaaataagactcaaaagccaacaacatat |
23178787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 23178875 - 23178909
Alignment:
| Q |
202 |
tgactgatgctaatcatggagggggtcatcatgga |
236 |
Q |
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| T |
23178875 |
tgactgatgctaatcctggagggggtcatcatgga |
23178909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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