View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_52 (Length: 253)
Name: NF19628_low_52
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2834023 - 2833795
Alignment:
| Q |
1 |
cgttatataacaaacaagtaagaagatacgttattgtccagtaattattcaccacccataaaaatacaaaaccgtgacataagataaataacagacacaa |
100 |
Q |
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| T |
2834023 |
cgttatataacaaacaagtaagaagatacgttattgtc--------attcaccacccataaaaatacaaaaccgtgacataagataaataacagacacaa |
2833932 |
T |
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| Q |
101 |
ctttttcccttacctaaaaaagcaaatttcatcaacttattaatttaaacaaagttattaatttccacttcaatatatactttcacacgaggcatgcaag |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833931 |
ctttttcccttacctaaaaaagcaaatttcaccaacttattaatttaaacaaagttattaatttccacttcaatatatactttcacacgaggcatgcaag |
2833832 |
T |
|
| Q |
201 |
tactttttatgtgtcattgaaataacgttgttggaaa |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2833831 |
tactttttatgtgtcattgaaataacgttgttggaaa |
2833795 |
T |
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