View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_53 (Length: 244)
Name: NF19628_low_53
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 41918729 - 41918516
Alignment:
| Q |
14 |
tgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttat |
113 |
Q |
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| T |
41918729 |
tgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttat |
41918630 |
T |
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| Q |
114 |
gttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgatt |
213 |
Q |
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| T |
41918629 |
gttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgatt |
41918530 |
T |
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| Q |
214 |
ataaagaactaatt |
227 |
Q |
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|||||||||||||| |
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| T |
41918529 |
ataaagaactaatt |
41918516 |
T |
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Back To:
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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 1687605 - 1687440
Alignment:
| Q |
17 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
116 |
Q |
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|||||||||||||||||||| |||||||| || ||| |||||| ||| || ||| ||| |||||||||| ||||||||||||||||||||||| |
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| T |
1687605 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
1687506 |
T |
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| Q |
117 |
catcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaa |
182 |
Q |
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|||| ||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| |
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| T |
1687505 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaa |
1687440 |
T |
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