View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_55 (Length: 238)
Name: NF19628_low_55
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_55 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 15736 - 15530
Alignment:
| Q |
18 |
catagaatcttaatgtctcttttatcacagccttgagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaat |
117 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15736 |
catagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaat |
15637 |
T |
|
| Q |
118 |
ttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15636 |
ttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtagg |
15537 |
T |
|
| Q |
218 |
ttctgtg |
224 |
Q |
| |
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||||||| |
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| T |
15536 |
ttctgtg |
15530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 3630349 - 3630555
Alignment:
| Q |
18 |
catagaatcttaatgtctcttttatcacagccttgagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaat |
117 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3630349 |
catagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaat |
3630448 |
T |
|
| Q |
118 |
ttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3630449 |
ttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtagg |
3630548 |
T |
|
| Q |
218 |
ttctgtg |
224 |
Q |
| |
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||||||| |
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| T |
3630549 |
ttctgtg |
3630555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 3619974 - 3620173
Alignment:
| Q |
19 |
atagaatcttaatgtctcttttatcacagccttgagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatt |
118 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3619974 |
atagaatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaactcttttttg------atgtttctaatt |
3620067 |
T |
|
| Q |
119 |
tcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtaggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| |||||||| | |
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|
| T |
3620068 |
tcttcttgagctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgtcagtagctgctacaagtagat |
3620167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 8979268 - 8979102
Alignment:
| Q |
23 |
aatcttaatgtctcttttatcacagccttgagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttctt |
122 |
Q |
| |
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||||||||||||||||||||||| ||||| | ||||| | |||||||||||||||||||||| || |||||||| || | | ||| |||||||| | |
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| T |
8979268 |
aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcct |
8979169 |
T |
|
| Q |
123 |
cttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctga |
189 |
Q |
| |
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|||| |||| ||||| ||||||| || || |||| ||||||| |||||||| ||||||||||| |
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| T |
8979168 |
cttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctga |
8979102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 9000384 - 9000507
Alignment:
| Q |
65 |
ttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccag |
164 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || | | ||||||||||| ||||| ||||| ||||| ||||||| || |||||||| ||| |
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| T |
9000384 |
ttttgaatatcatcttcatctaaaaaatctttttcacctcccaaatttctaatttcatcttgtactttcctcattactcttgggtttttcattaaggcag |
9000483 |
T |
|
| Q |
165 |
tcatcgcccaaaccgatgtggctg |
188 |
Q |
| |
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|||| |||||||| |||||||||| |
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| T |
9000484 |
tcatagcccaaactgatgtggctg |
9000507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 8966432 - 8966556
Alignment:
| Q |
23 |
aatcttaatgtctcttttatcacagccttgagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttctt |
122 |
Q |
| |
|
||||| || |||||||||||||| ||||| | |||| | ||||||||||||| ||| |||||||| |||||||| | | | |||||||||||||| |
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| T |
8966432 |
aatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttctt |
8966531 |
T |
|
| Q |
123 |
cttgagctttcttcattgctcttgg |
147 |
Q |
| |
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|||| ||||||||||| ||||||| |
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| T |
8966532 |
cttgtactttcttcattactcttgg |
8966556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 20074255 - 20074379
Alignment:
| Q |
65 |
ttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccag |
164 |
Q |
| |
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||||| ||||||||||||||||| || |||||||| | | |||||||| |||| ||| ||||||||||| |||||||||| || |||||| ||| |
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| T |
20074255 |
ttttgtatatcatcttcatctataaattcttttttaacttttgaatttctaatctcttgttgtactttcttcattactcttggattttttattaatgcag |
20074354 |
T |
|
| Q |
165 |
tcatcgcccaaaccgatgtggctga |
189 |
Q |
| |
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|||| ||||| || | ||||||||| |
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| T |
20074355 |
tcatagcccatactgttgtggctga |
20074379 |
T |
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