View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19628_low_6 (Length: 656)

Name: NF19628_low_6
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19628_low_6
NF19628_low_6
[»] chr3 (6 HSPs)
chr3 (16-648)||(5303667-5304298)
chr3 (16-60)||(23070097-23070141)
chr3 (16-100)||(55257704-55257787)
chr3 (70-100)||(18359295-18359325)
chr3 (16-60)||(17030744-17030788)
chr3 (72-100)||(25158853-25158881)
[»] chr5 (8 HSPs)
chr5 (200-646)||(29224154-29224593)
chr5 (200-646)||(29147062-29147527)
chr5 (334-460)||(38851889-38852015)
chr5 (16-60)||(42779019-42779063)
chr5 (70-100)||(21144023-21144053)
chr5 (16-101)||(15399675-15399761)
chr5 (564-637)||(38852097-38852170)
chr5 (70-98)||(7216580-7216608)
[»] scaffold0188 (1 HSPs)
scaffold0188 (16-165)||(13300-13451)
[»] chr2 (5 HSPs)
chr2 (16-100)||(42223242-42223325)
chr2 (16-62)||(16590633-16590679)
chr2 (16-62)||(11915205-11915251)
chr2 (72-100)||(35791059-35791087)
chr2 (16-60)||(35791181-35791225)
[»] chr1 (7 HSPs)
chr1 (16-166)||(13437034-13437185)
chr1 (16-100)||(33864238-33864321)
chr1 (16-100)||(33916601-33916684)
chr1 (17-100)||(7261505-7261587)
chr1 (70-100)||(22315210-22315240)
chr1 (70-100)||(33864115-33864145)
chr1 (70-100)||(33916777-33916807)
[»] chr6 (2 HSPs)
chr6 (17-60)||(9662904-9662947)
chr6 (70-100)||(20757498-20757528)
[»] chr4 (5 HSPs)
chr4 (17-101)||(49277726-49277809)
chr4 (16-100)||(8678889-8678973)
chr4 (70-100)||(9780392-9780422)
chr4 (70-100)||(16734144-16734174)
chr4 (16-60)||(8810095-8810139)
[»] chr8 (4 HSPs)
chr8 (16-100)||(9235504-9235587)
chr8 (16-162)||(23289067-23289213)
chr8 (21-62)||(13373277-13373318)
chr8 (17-61)||(26367312-26367356)
[»] chr7 (7 HSPs)
chr7 (16-99)||(2936188-2936270)
chr7 (16-60)||(42957463-42957507)
chr7 (70-155)||(3092497-3092584)
chr7 (16-101)||(19377107-19377192)
chr7 (70-98)||(8490808-8490836)
chr7 (16-60)||(11625179-11625223)
chr7 (16-60)||(43393925-43393969)
[»] scaffold0067 (1 HSPs)
scaffold0067 (16-60)||(25897-25941)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-60)||(82364-82408)


Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 648
Target Start/End: Original strand, 5303667 - 5304298
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaaannnnnnnacggggt 115  Q
    ||||||||||||| || |||||||||| |||| ||||||  ||||||       ||||||||||||||||||||||||||||||||       || ||||    
T  5303667 gaaagtaccttaagttctgtaatttgatgtcatgaaggtctaaaaccaaagaa-tcttcaaattacagggttggaatctaaacaaatttttttacagggt 5303765  T
Q  116 gtaaactgaaaatcactaatattatagggtaaacatatataaaccctaaaatacaattgagaaatgaaaaaggggagcatatatacatacttgcagaata 215  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5303766 gtaaaccgaaaatcactaatattatatggtaaacatatataaaccctaaaatacaattgagaaatgaaaaaggggagcatatatacatacttgcagaata 5303865  T
Q  216 aaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaatgaccactgcagaatggg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  5303866 aaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaataacccctgcagaatggg 5303965  T
Q  316 aactatgatgatgaggaccaatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctct 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5303966 aactatgatgatgaggaccaatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctct 5304065  T
Q  416 accaacccatgttctaatactcaaattctccattctgcagtagtagtcattcacaaatttatacatactagtatatggtagtttaatttgtttatgtagc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5304066 accaacccatgttctaatactcaaattctccattctgcagtagtagtcattcacaaatttatacatactagtatatggtagtttaatttgtttatgtagc 5304165  T
Q  516 taaatttaatgtgtctttaattaatttggatacctgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtag 615  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5304166 taaatttaatgtgtctttaactaatttggatacctgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtag 5304265  T
Q  616 cagatgtgtctcggagaccataatagaataatc 648  Q
    |||||||||||||||||||||||||||||||||    
T  5304266 cagatgtgtctcggagaccataatagaataatc 5304298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 23070141 - 23070097
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  23070141 gaaagtaccttaaattttataatttgatgtcacgaaggttcaaaa 23070097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 55257787 - 55257704
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    ||||||||||||||||||||||||||| | || |||||| |||||         ||||||||||| |||||||||||||||||||    
T  55257787 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaa-taaaaaaatcttcaaattatagggttggaatctaaacaa 55257704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 18359325 - 18359295
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  18359325 tcttcaaattacagggttggaatctaaacaa 18359295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 17030744 - 17030788
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    ||||||||||||||||||||||||||| | || |||||| |||||    
T  17030744 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaa 17030788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 25158881 - 25158853
Alignment:
Q  72 ttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||    
T  25158881 ttcaaattacagggttggaatctaaacaa 25158853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 200 - 646
Target Start/End: Original strand, 29224154 - 29224593
Alignment:
Q  200 acatacttgcagaataaaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaatg 299  Q
    ||||||||| |||||||||||||| |||||| | || |||| |||||||||||||||||| ||||||| ||| |||||||| |||||| |||||| | |     
T  29224154 acatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagcacta 29224253  T
Q  300 accactgcagaatgggaactatgatgatgagga------------ccaatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacac 387  Q
    | | | |||||||||  ||||||||||||| ||            |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  29224254 atctcagcagaatggtgactatgatgatgatgatgatgatgatgaccaatataaaattccttccctttgtaaagactcgttgctaatgctccaccaacac 29224353  T
Q  388 acaaaattgccccaatacccttagctctaccaacccatgttctaatactcaaattctccattctgcagtagtagtcattcacaaatttatacatactagt 487  Q
    ||| ||| || || |||| ||| ||||||||| ||||||||| |||  ||||||||||||||||||| | | | |||| || |||||||||        |    
T  29224354 acataatagctcctatacacttggctctaccaccccatgttccaatcttcaaattctccattctgcaattgcactcatccaaaaatttata--------t 29224445  T
Q  488 atatggtagtttaatttgtttatgtagctaaatttaatgtgtctttaattaatttggatacctgcatatgatagaagtcaagaaggtgcaaatgggaacc 587  Q
    || ||| || ||||||| ||||||||| ||||           || |||||  ||  ||||||||||||||||||||| ||||| ||  | || ||||||    
T  29224446 atttggaagattaatttatttatgtagttaaa-----------ttaaattagattatatacctgcatatgatagaagttaagaatgtcaatataggaacc 29224534  T
Q  588 aagttgagaaagttgacagcataagtagcagatgtgtctcggagaccataatagaataa 646  Q
    ||||||||||||||||| | ||||||||||| ||||||||| ||||| |||||||||||    
T  29224535 aagttgagaaagttgacggaataagtagcagttgtgtctcgaagaccgtaatagaataa 29224593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 200 - 646
Target Start/End: Complemental strand, 29147527 - 29147062
Alignment:
Q  200 acatacttgcagaataaaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaatg 299  Q
    ||||||||| |||||||||||||| |||||| | || |||| |||||||||||||||||| ||||||| |||  ||||||| |||||| |||||| | |     
T  29147527 acatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgcgagttttgtgtgctgcaacagcacta 29147428  T
Q  300 accactgcagaatgggaactatgatgatgagga------ccaatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaa 393  Q
    | | | |||||||||  ||||||||||||| ||      |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||    
T  29147427 atctcagcagaatggtgactatgatgatgatgatgatgaccaatataaaattccttccctttgtaaagactcgttgctaatgctccaccaacacacataa 29147328  T
Q  394 ttgccccaatacccttagctctaccaacccatgttctaatactcaaattctccattctgcagtagtagtcattcacaaatttatacat---------act 484  Q
    | || || |||| ||| ||||||||| ||||||||| |||  ||||||||||||||||| |||| |  | ||||| || |||||  ||         |||    
T  29147327 tagctcctatacacttggctctaccaccccatgttccaatcttcaaattctccattctgtagtaatttttattcagaattttatgtatctatctatgact 29147228  T
Q  485 -agtatatggtagtttaatttgttt---atgtagctaaatttaatgtgtctttaattaatttggatacctgcatatgatagaagtcaagaaggtgcaaat 580  Q
       ||||||  || ||| ||| |||   ||||| ||||||| ||| | |||| || |||||| |||||||| |||| ||||| || ||||| ||||||||    
T  29147227 ctatatatgtcagattagtttatttattatgtaactaaattaaatttatcttaaagtaatttagatacctgaatattatagaggttaagaatgtgcaaat 29147128  T
Q  581 gggaaccaagttgagaaagttgacagcataagtagcagatgtgtctcggagaccataatagaataa 646  Q
     || |||||||||||||| ||||| | ||||| ||||| ||||||||| |||||||||||||||||    
T  29147127 aggtaccaagttgagaaaattgactgaataagcagcagttgtgtctcgaagaccataatagaataa 29147062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 334 - 460
Target Start/End: Original strand, 38851889 - 38852015
Alignment:
Q  334 caatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctctaccaacccatgttctaat 433  Q
    |||| ||||| ||||| |||||||| || |||| |||||||| |||| ||||||||||||||||||| | || |||||||||||||  ||||||   |||    
T  38851889 caatgtaaaactcctttcctttgtatagtcttgcagctaatgttccagcaacacacaaaattgccccgacacacttagctctaccattccatgtgtgaat 38851988  T
Q  434 actcaaattctccattctgcagtagta 460  Q
      ||||||||||||||||||| |||||    
T  38851989 gttcaaattctccattctgcaatagta 38852015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 42779019 - 42779063
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||    
T  42779019 gaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaa 42779063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 21144053 - 21144023
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  21144053 tcttcaaattacagggttggaatctaaacaa 21144023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 15399761 - 15399675
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa-ccnnnnnnntcttcaaattacagggttggaatctaaacaaa 101  Q
    ||||||||||||||||||||||||||| || | |||||| |||||          |||||||||||||||||||| |||||||||||    
T  15399761 gaaagtaccttaaattttgtaatttgatgttatgaaggtccaaaataaaaaaaaatcttcaaattacagggttgggatctaaacaaa 15399675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 637
Target Start/End: Original strand, 38852097 - 38852170
Alignment:
Q  564 gtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtagcagatgtgtctcggagaccata 637  Q
    |||||||| ||||| || ||||  ||||||||||| |||| |||||| || |||||||||||||| | ||||||    
T  38852097 gtcaagaatgtgcagataggaattaagttgagaaaattgagagcatatgtggcagatgtgtctcgaataccata 38852170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 7216580 - 7216608
Alignment:
Q  70 tcttcaaattacagggttggaatctaaac 98  Q
    |||||||||||||||||||||||||||||    
T  7216580 tcttcaaattacagggttggaatctaaac 7216608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 13300 - 13451
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaaannnnnnnacggggt 115  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||| |       ||||||||||||| ||||||||||||||||||       || |||     
T  13300 gaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacaaggttggaatctaaacaaatttttttacagggg 13399  T
Q  116 gtaaactgaaaatcactaatattata--gggtaaacatatataaaccctaaa 165  Q
    ||||||  |||||| ||||||||| |  |||||||||||||| |||||||||    
T  13400 gtaaaccaaaaatcgctaatattacagggggtaaacatatattaaccctaaa 13451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 42223242 - 42223325
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    ||||||||||||||||||||||||||| | || |||||||||||| |       |||||||||||||||||||||||||||||||    
T  42223242 gaaagtaccttaaattttgtaatttgatgccatgaaggttcaaaatc-aaaaaatcttcaaattacagggttggaatctaaacaa 42223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 16590633 - 16590679
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaacc 62  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||    
T  16590633 gaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaacc 16590679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11915205 - 11915251
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaacc 62  Q
    |||||| |||||||||||||||||||| |||| |||||| |||||||    
T  11915205 gaaagtgccttaaattttgtaatttgatgtcatgaaggtccaaaacc 11915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 35791087 - 35791059
Alignment:
Q  72 ttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||    
T  35791087 ttcaaattacagggttggaatctaaacaa 35791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 35791181 - 35791225
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    ||||||||||||||||||||||||||| | || ||||||| ||||    
T  35791181 gaaagtaccttaaattttgtaatttgatggcatgaaggtttaaaa 35791225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 13437034 - 13437185
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaaannnnnnnacggggt 115  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||| |       || |||||||||| ||||||||||||||||||       ||| ||     
T  13437034 gaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatc-aaaaaatcatcaaattacacggttggaatctaaacaaatttttttacgagg- 13437131  T
Q  116 gtaaactgaaaatcactaatattata---gggtaaacatatataaaccctaaaa 166  Q
    |||||| ||||||| ||||||||| |   |||||||||||||| ||||| ||||    
T  13437132 gtaaaccgaaaatcgctaatattacaaaggggtaaacatatattaacccaaaaa 13437185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 33864238 - 33864321
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    |||| |||||||||||||||||||||| | ||  ||||| |||||||       |||||||||||||||||||||||||||||||    
T  33864238 gaaaataccttaaattttgtaatttgatgccataaaggtccaaaaccaaagaa-tcttcaaattacagggttggaatctaaacaa 33864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 33916684 - 33916601
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    |||| |||||||||||||||||||||| | ||  ||||| |||||||       |||||||||||||||||||||||||||||||    
T  33916684 gaaaataccttaaattttgtaatttgatgccataaaggtccaaaaccaaagaa-tcttcaaattacagggttggaatctaaacaa 33916601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 7261505 - 7261587
Alignment:
Q  17 aaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||| ||||||| ||||||| |||| |||||| |||||||       | |||||||||||||||||||||||||||||    
T  7261505 aaagtaccttcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaa-tgttcaaattacagggttggaatctaaacaa 7261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 22315240 - 22315210
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  22315240 tcttcaaattacagggttggaatctaaacaa 22315210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 33864145 - 33864115
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  33864145 tcttcaaattacagggttggaatctaaacaa 33864115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 33916777 - 33916807
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  33916777 tcttcaaattacagggttggaatctaaacaa 33916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 9662904 - 9662947
Alignment:
Q  17 aaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  9662904 aaagtaccttaaattttgtaatttgatgtcatgaaggttcaaaa 9662947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 20757528 - 20757498
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  20757528 tcttcaaattacagggttggaatctaaacaa 20757498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 49277809 - 49277726
Alignment:
Q  17 aaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaaa 101  Q
    |||||||||||||||||||||||||| | || |||||| |||||||       | ||||||||||| ||||||||||||||||||    
T  49277809 aaagtaccttaaattttgtaatttgatgccatgaaggtccaaaaccaaataatt-ttcaaattacacggttggaatctaaacaaa 49277726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 8678973 - 8678889
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    ||||||||||||||||||||||||||| | || |||||| |||||         ||||||||||||| |||| ||||||||||||    
T  8678973 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaaatcttcaaattacaaggtttgaatctaaacaa 8678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 9780422 - 9780392
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  9780422 tcttcaaattacagggttggaatctaaacaa 9780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 16734174 - 16734144
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaa 100  Q
    |||||||||||||||||||||||||||||||    
T  16734174 tcttcaaattacagggttggaatctaaacaa 16734144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8810095 - 8810139
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    |||||||||||||||||| |||||||| |||| |||||| |||||    
T  8810095 gaaagtaccttaaattttataatttgatgtcatgaaggtccaaaa 8810139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 9235504 - 9235587
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaa 100  Q
    ||||||||||||||||||||||||||| | || |||||| ||||| |       ||||||||||||||||||| |||||||||||    
T  9235504 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatc-aaaaaatcttcaaattacagggttgaaatctaaacaa 9235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 23289067 - 23289213
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaacaaannnnnnnacggggt 115  Q
    ||||||||||||||||||||||||||| | || |||||| ||||          |||||||||||||||||||||||||||||||        || |||     
T  23289067 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaagt-taaaaaatcttcaaattacagggttggaatctaaacaattttttttacagggg 23289165  T
Q  116 gtaaactgaaaatcactaatattata-gggtaaacatatataaaccct 162  Q
     ||||| ||||||||||||||||| | ||| |||||||||| ||||||    
T  23289166 ataaaccgaaaatcactaatattacaggggcaaacatatattaaccct 23289213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 13373318 - 13373277
Alignment:
Q  21 taccttaaattttgtaatttgaagtcacgaaggttcaaaacc 62  Q
    |||||||||||||||||||||| | || ||||||||||||||    
T  13373318 taccttaaattttgtaatttgatgccaggaaggttcaaaacc 13373277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 26367312 - 26367356
Alignment:
Q  17 aaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaac 61  Q
    |||||||||||||||||| ||||| || ||| |||||||||||||    
T  26367312 aaagtaccttaaattttgaaatttaaaatcaagaaggttcaaaac 26367356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2936270 - 2936188
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattacagggttggaatctaaaca 99  Q
    ||||||||||||||||||||||||||| |||| ||||||  ||||||       | ||||||||||| ||||||||||||||||    
T  2936270 gaaagtaccttaaattttgtaatttgatgtcatgaaggtctaaaaccaaataatt-ttcaaattacatggttggaatctaaaca 2936188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 42957507 - 42957463
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||    
T  42957507 gaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaa 42957463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 3092497 - 3092584
Alignment:
Q  70 tcttcaaattacagggttggaatctaaacaaannnnnnnacggggtgtaaactgaaaatcactaatattata--gggtaaacatatat 155  Q
    |||||||||||||||||||||||||||||||        || ||| |||||||||||||| ||||| ||| |  ||||||||||||||    
T  3092497 tcttcaaattacagggttggaatctaaacaattctttttacagggggtaaactgaaaatcgctaattttacaaggggtaaacatatat 3092584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 19377107 - 19377192
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaaccnnnnnnntcttcaaattaca-gggttggaatctaaacaaa 101  Q
    ||||||||||||||||||||||||||| | || |||||| |||||         ||||||||||||| |||||||||||||||||||    
T  19377107 gaaagtaccttaaattttgtaatttgacgccatgaaggtccaaaa-taaaaatatcttcaaattacaggggttggaatctaaacaaa 19377192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 8490808 - 8490836
Alignment:
Q  70 tcttcaaattacagggttggaatctaaac 98  Q
    |||||||||||||||||||||||||||||    
T  8490808 tcttcaaattacagggttggaatctaaac 8490836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 11625179 - 11625223
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    |||||||||||||||| |||||||||| |||| |||||| |||||    
T  11625179 gaaagtaccttaaattatgtaatttgatgtcatgaaggtccaaaa 11625223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 43393925 - 43393969
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    ||||||||||||||||||||||||||| | || |||||| |||||    
T  43393925 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaa 43393969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 25897 - 25941
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    ||||||||||||||||||||||||||| | || |||||| |||||    
T  25897 gaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaa 25941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 82364 - 82408
Alignment:
Q  16 gaaagtaccttaaattttgtaatttgaagtcacgaaggttcaaaa 60  Q
    |||||||||||||||||||||||||||  ||| |||||| |||||    
T  82364 gaaagtaccttaaattttgtaatttgatatcatgaaggtccaaaa 82408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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