View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_8 (Length: 603)
Name: NF19628_low_8
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 17584607 - 17585193
Alignment:
| Q |
1 |
aaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgattagcacaatgg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17584607 |
aaagtagtatatgcacagctcatcaggaggagccgtcacattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgattagcacaacgg |
17584706 |
T |
|
| Q |
101 |
ttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17584707 |
ttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
17584806 |
T |
|
| Q |
201 |
attatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17584807 |
attatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcaattgagtagagcaactattgattacttttgagaaattc |
17584906 |
T |
|
| Q |
301 |
tggattgtcaaaacatgtacaac--atattctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcctaaaacttcat |
398 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17584907 |
tggattgtcaaaacatgtacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcctaaaacttcat |
17585006 |
T |
|
| Q |
399 |
gaattccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaannnnnnnnnnnnnnnnggctggcaggcatagctgatgg |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17585007 |
gaattccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaattttgtttttatttttggctggcaggcatagctgatgg |
17585106 |
T |
|
| Q |
499 |
ctgatacaatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatg |
585 |
Q |
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| T |
17585107 |
ctgatacaatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatg |
17585193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 205 - 585
Target Start/End: Complemental strand, 14741386 - 14741003
Alignment:
| Q |
205 |
tctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741386 |
tctgtaaccatgtctaaaagaattttagagtccttgagttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
14741287 |
T |
|
| Q |
305 |
ttgtcaaaacatgta-caacatat--tctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcctaaaacttcatgaa |
401 |
Q |
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| T |
14741286 |
ttgtcaaaacatgtaacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcctaaaacttcatgaa |
14741187 |
T |
|
| Q |
402 |
ttccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaannnnnnnnnnnnnnnnggctggcaggcatagctgatggctg |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14741186 |
ttccatccgatccccgactcttgtattgcccatttaccaatcatgatttgtctcattaattttgtttttatttttggctggcaggcatagctgatggctg |
14741087 |
T |
|
| Q |
502 |
atacaatctcatcaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatg |
585 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741086 |
atacaatctcattaccagatttacctaagatcaaaaaacataatgctggtgacatgaaagatatgataagcaacatgcctgatg |
14741003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14742471 - 14742262
Alignment:
| Q |
1 |
aaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgattagcacaatgg |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
14742471 |
aaagtagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaatttgctagccgattagcacaacgg |
14742372 |
T |
|
| Q |
101 |
ttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
200 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742371 |
ttttcgtccttcaa----gacagaactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaaccaccaccctaaattttca |
14742276 |
T |
|
| Q |
201 |
attatctgtaacca |
214 |
Q |
| |
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|||||||||||||| |
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| T |
14742275 |
attatctgtaacca |
14742262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 38929841 - 38929922
Alignment:
| Q |
67 |
aaggctaaaattagctagccgattagcacaatggttt-tcttccttcaagtatgacagaactgaacatgccaatataaagcc |
147 |
Q |
| |
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|||||||||||||| ||||| || ||||||| |||| | ||||| |||||||||| ||||||||||| |||| ||||||| |
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| T |
38929841 |
aaggctaaaattagttagccaatcagcacaacagtttcttttcctccaagtatgacgaaactgaacatgtcaatctaaagcc |
38929922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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