View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19628_low_9 (Length: 578)
Name: NF19628_low_9
Description: NF19628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19628_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 12 - 562
Target Start/End: Original strand, 7760614 - 7761164
Alignment:
| Q |
12 |
gattattgacatgagaaaaacatgaaattatacatcttctaaaggccggatgatcaacgtttgcactcatgtgttcaatgtattattagtaaatggccaa |
111 |
Q |
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| T |
7760614 |
gattattgacatgagaaaaacatgaaattatacatcttctaaaggccggatgatcaacgtttgcactcatgtgttcaatgtattattagtaaatggccaa |
7760713 |
T |
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| Q |
112 |
acattaaatactgagagactcattcagaatctggaagctttagtgcaaggacatgatttaatcctacttggggcagacttaatactagcagtagaagcaa |
211 |
Q |
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| T |
7760714 |
acattaaatactgagagactcattcagaatctggaagctttagtgcaaggacatgatttaaccctacttggggcagacttaatactagcagtagaagcca |
7760813 |
T |
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| Q |
212 |
cttggggactcatgtagcgctgataatgaagcattacagcttaaattctttcagcaaaggaagatttgtcgttgtccgaggtgagaaaaccaagttatca |
311 |
Q |
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| T |
7760814 |
cttggg-actcatgtagcgctgataatgaagcattacagcttaaattctttcagcaaaggaagatttgtcgttgtccgaggtgagaaaaccaagttatca |
7760912 |
T |
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| Q |
312 |
gaacaagtacaactccatctctgcaatgatttg-ttacagttggttgaagctgaaaacccacaaaactattagttagagctgtcgaactctatcgaacaa |
410 |
Q |
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| T |
7760913 |
caacaagtacaactccatctctgcaatgatttggttacagttggttgaagctgaaaacccacaaaactattagttagagctgtcgaactctatcgaacaa |
7761012 |
T |
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| Q |
411 |
gagttagggcgggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaatgtcaaataagctaaattcttcagagtatactataggtacca |
510 |
Q |
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| T |
7761013 |
gagttagggcgggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaatgtcaaataagctaaattcttcagagtatactataggtacca |
7761112 |
T |
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| Q |
511 |
gtcatgatatgacaaggaatgaatatagacgaaccaacaaatacaaagatgg |
562 |
Q |
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| T |
7761113 |
gtcatgatatgacaaggaatgaatatagacgaaccaacaaatacaaagatgg |
7761164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 468
Target Start/End: Original strand, 7815791 - 7815838
Alignment:
| Q |
421 |
gggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaa |
468 |
Q |
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| T |
7815791 |
gggaagaatgcttattcacgcgacaagaaattaaatcacaatgcacaa |
7815838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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